Factsheet for Solyc01g108500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066648	Potato	nucleus	98.31	96.67
Solyc10g050860.1.1	Tomato	nucleus	82.81	79.91
VIT_03s0063g00850.t01	Wine grape	nucleus	69.73	69.57
KRH71168	Soybean	nucleus	69.01	66.13
KRH50251	Soybean	nucleus	68.28	65.43
GSMUA_Achr9P15210_001	Banana	nucleus	48.67	64.42
GSMUA_Achr3P06840_001	Banana	nucleus	48.67	64.42
GSMUA_Achr10P...	Banana	nucleus	48.43	63.69
Bra018813.1-P	Field mustard	mitochondrion, nucleus	60.05	63.59
CDY29341	Canola	nucleus	63.2	62.29
CDY68866	Canola	nucleus	62.47	62.17
CDX92304	Canola	nucleus	63.68	62.03
CDY50959	Canola	nucleus	64.41	61.86
CDY16528	Canola	nucleus	63.44	61.79
Bra022389.1-P	Field mustard	nucleus	63.68	61.74
CDX99265	Canola	nucleus	63.2	61.56
CDY28101	Canola	nucleus	63.92	61.54
TraesCS5D01G250100.1	Wheat	nucleus	50.85	61.4
CDY22988	Canola	nucleus	62.23	61.19
TraesCS5B01G241400.1	Wheat	nucleus	50.61	61.11
TraesCS5A01G243500.1	Wheat	nucleus	50.36	60.82
CDY32840	Canola	nucleus	61.99	60.81
GSMUA_Achr6P10190_001	Banana	nucleus	46.0	60.7
Bra040663.1-P	Field mustard	nucleus	54.48	60.48
CDX82310	Canola	nucleus	60.29	60.44
Bra001735.1-P	Field mustard	nucleus	60.29	60.44
AT3G19130.1	Thale cress	nucleus	63.44	60.23
CDY18570	Canola	nucleus	62.71	59.68
CDX95462	Canola	nucleus	62.47	59.45
Os02t0567900-01	Rice	cytosol, nucleus	36.8	58.69
Solyc04g079310.2.1	Tomato	nucleus	61.99	56.76
Bra037538.1-P	Field mustard	nucleus	54.24	55.58
AT1G49600.3	Thale cress	nucleus	60.29	55.33
Os04t0449900-01	Rice	plastid	50.85	54.26
TraesCS6A01G204400.1	Wheat	mitochondrion	49.15	53.56
GSMUA_Achr3P01720_001	Banana	mitochondrion	50.85	52.11
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	54.48	51.96
Solyc03g031720.2.1	Tomato	nucleus	50.85	51.85
Solyc10g005260.2.1	Tomato	nucleus	51.57	51.82
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	53.03	51.65
KXG35789	Sorghum	nucleus	54.72	51.6
Zm00001d020748_P002	Maize	plasma membrane	54.0	51.5
Solyc07g064510.2.1	Tomato	plastid	50.12	50.49
GSMUA_Achr6P09470_001	Banana	nucleus	17.92	50.34
TraesCS2B01G335700.1	Wheat	plastid	51.09	50.24
TraesCS2A01G317700.2	Wheat	plastid	51.33	50.0
TraesCS2D01G315400.2	Wheat	plastid	51.33	50.0
EES10898	Sorghum	nucleus	50.85	49.65
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	49.15	49.15
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	49.39	48.92
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	49.15	48.68
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	51.33	48.07
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	49.64	48.01
Solyc11g065880.1.1	Tomato	nucleus	48.18	47.72
EES05289	Sorghum	plastid	48.67	46.21
Zm00001d050838_P001	Maize	plastid	47.46	45.58
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	49.39	44.74
Zm00001d025551_P002	Maize	plastid	47.7	43.58
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	47.22	41.14
Bra014216.1-P	Field mustard	nucleus	54.96	39.69
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	25.91	26.68
Solyc06g063000.2.1	Tomato	nucleus	26.15	25.9
Solyc07g042180.2.1	Tomato	nucleus	24.94	25.88
Solyc03g122180.2.1	Tomato	nucleus	25.67	25.42
Solyc03g118800.2.1	Tomato	nucleus	15.01	17.03
Solyc01g107870.2.1	Tomato	extracellular	21.79	14.0
Solyc12g088720.1.1	Tomato	plastid	22.03	13.66
Solyc09g008620.1.1	Tomato	cytosol	19.85	13.55
Solyc10g085750.1.1	Tomato	nucleus	20.1	13.34
Solyc06g062680.1.1	Tomato	cytosol	11.14	8.66

Protein Annotations

EnsemblPlants:Solyc01g108500.2.1	EnsemblPlantsGene:Solyc01g108500.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000276841B	UniProt:K4B365	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr1:-:95804701..95810655

Molecular Weight (calculated)

45303.5 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.698

Length

413 amino acids

Sequence
(BLAST)

001: MNGGDLNQQQ QQQQQQQQQW VAMQQYQQQW MAMQYPAAAM AMQQQMMYGQ QYMPYYHQQK MQQPPTQIQN SSEDNKTIWI GDLQQWMDES YLHSCFSHAG
101: EVISVKIIRN KQTGQSERYG FVEFNSHAAA EKVLQSYNGT MMPNAEQPFR LNWAAFSAGE KRAETGSDFS IFVGDLASDV TDTMLRDTFA SRYPSVKGAK
201: VVVDANTGHS KGYGFVRFGD ESERSRAMTE MNGIYCSSRP MRVGVATPKK PSAQQQFSSQ AVILSGGYAS NGAATHGSQS DGDSSNTTIF VGGLDSDVTD
301: EELRQSFTQF GEVVSVKIPA GKGCGFVQFS DRSSAQEAIQ KLSGAVIGKQ AVRLSWGRSP SNKQMRSDSG NGGGYYGRQN YGGYGYGASQ NQDSGMYAAG
401: AASNGYGNQQ PVS

Best Arabidopsis Sequence Match ( AT3G19130.1 )
(BLAST)

001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN

Arabidopsis Description

RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.