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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g116320.2.1
Solyc04g011560.2.1
Solyc07g066570.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G14100.1 Solyc07g066570.2.1 AT1G16500.1 21798944
AT3G14100.1 Solyc04g011560.2.1 AT2G22090.2 12024044
AT3G14100.1 Solyc03g116320.2.1 AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400058919 Potato nucleus 98.56 98.56
Solyc06g063000.2.1 Tomato nucleus 85.37 85.37
GSMUA_Achr6P11660_001 Banana mitochondrion 77.94 76.83
AT3G14100.1 Thale cress nucleus 78.18 76.35
GSMUA_Achr10P... Banana mitochondrion 76.98 75.53
Bra037962.1-P Field mustard nucleus 74.82 74.11
CDY61476 Canola nucleus 74.34 73.99
Bra030908.1-P Field mustard nucleus 74.34 73.99
GSMUA_Achr3P02150_001 Banana mitochondrion, nucleus 76.98 73.96
CDY02486 Canola nucleus 74.34 73.81
CDY51403 Canola nucleus 74.34 73.81
CDY33092 Canola nucleus 75.06 73.65
Solyc07g042180.2.1 Tomato nucleus 68.82 72.11
AT1G54080.2 Thale cress nucleus 73.38 71.16
GSMUA_Achr11P... Banana nucleus 75.3 70.72
Solyc12g009230.1.1 Tomato mitochondrion, nucleus 66.67 69.33
Os11t0620100-01 Rice nucleus 71.7 67.8
TraesCS4B01G148600.1 Wheat nucleus 72.18 67.64
Os07t0615400-01 Rice nucleus 68.59 66.98
Zm00001d048824_P004 Maize nucleus 71.7 66.89
TraesCS4D01G150600.2 Wheat nucleus 71.22 66.15
VIT_04s0043g01000.t01 Wine grape cytosol, extracellular, mitochondrion 23.02 65.75
TraesCS4A01G150000.1 Wheat mitochondrion 70.02 65.18
EES08860 Sorghum nucleus 68.82 65.08
TraesCS2D01G176700.1 Wheat nucleus 65.95 64.55
GSMUA_Achr2P21780_001 Banana nucleus, plastid 76.74 64.52
TraesCS2A01G169100.1 Wheat nucleus 65.71 64.02
TraesCS2B01G195400.1 Wheat nucleus 65.71 63.87
HORVU4Hr1G033990.7 Barley golgi, nucleus 67.15 63.78
Zm00001d026528_P001 Maize plastid 33.33 63.18
Zm00001d026522_P001 Maize nucleus 33.09 56.56
HORVU2Hr1G031260.2 Barley nucleus, plastid 66.19 55.53
Solyc03g031720.2.1 Tomato nucleus 24.94 25.68
Solyc01g108500.2.1 Tomato nucleus 25.42 25.67
Solyc07g064510.2.1 Tomato plastid 24.7 25.12
Solyc02g080420.2.1 Tomato extracellular, nucleus, plastid 24.7 24.94
Solyc10g005260.2.1 Tomato nucleus 24.22 24.57
Solyc10g050860.1.1 Tomato nucleus 25.18 24.53
Solyc04g079310.2.1 Tomato nucleus 25.42 23.5
Solyc11g065880.1.1 Tomato nucleus 23.02 23.02
Solyc03g118800.2.1 Tomato nucleus 17.03 19.51
Solyc01g107870.2.1 Tomato extracellular 23.02 14.93
Solyc12g088720.1.1 Tomato plastid 22.3 13.96
Solyc10g085750.1.1 Tomato nucleus 20.38 13.67
Solyc09g008620.1.1 Tomato cytosol 19.66 13.55
Solyc06g062680.1.1 Tomato cytosol 10.31 8.1
Protein Annotations
EnsemblPlants:Solyc03g122180.2.1EnsemblPlantsGene:Solyc03g122180.2Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_dom
PANTHER:PTHR44160PANTHER:PTHR44160:SF2PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360
SUPFAM:SSF54928UniParc:UPI00027657D8UniProt:K4BN16MapMan:16.9.3::
Description
No Description!
Coordinates
chr3:-:70095707..70100288
Molecular Weight (calculated)
45670.8 Da
IEP (calculated)
6.938
GRAVY (calculated)
-0.410
Length
417 amino acids
Sequence
(BLAST)
001: MLNHRLKQEQ QQALMQQALL QQQSLYHPGL IAAPQIPSGN LPPGFDPSTC RSVYIGNIHP QVSETLLHEL FSCTGLVEGC KLVRKDKSSY GFVHYYDRRS
101: AELAIVTQNG RHLFGQPIKV NWAYASGQRE DTSSHFNVFV GDLSPEVTDA MLFACFSVYP SCSDARVMWD QQTGRSRGFG FVSFRNQQDA QSAINDLTGK
201: WLGSRQIRCN WATKGANSND EQGSEIRSVV ELTNGSSEDG KDPASSDAPE NNPQYTTVYV GNLAPEATQL DLHRHFYVIG AGVIEEVRVQ RDKGFGFVRY
301: STHDEAALAI QMGNAQSILC GRQIKCSWGN KPTPPGTASN PLPPPAAAPL GLTATDLLTY ERQLAMSKMA GVHALMQSQG QHPLKQASMG MSASGASQAI
401: YDGGFQNLAA QQLMYYQ
Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.