Factsheet for Solyc09g008620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033802	Potato	cytosol	94.38	93.91
Solyc10g085750.1.1	Tomato	nucleus	61.98	60.29
VIT_08s0007g04380.t01	Wine grape	cytosol	61.49	58.68
KRH32613	Soybean	cytosol	46.94	58.08
KRH67800	Soybean	cytosol	60.33	57.75
KRG96088	Soybean	cytosol	59.34	56.45
KRH19986	Soybean	cytosol	45.95	56.16
Bra034301.1-P	Field mustard	mitochondrion	8.93	48.65
CDY72408	Canola	plastid	7.27	47.31
AT2G36660.1	Thale cress	cytosol, plastid	47.27	46.96
GSMUA_Achr9P10860_001	Banana	cytosol	52.73	44.62
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.97	41.11
Solyc01g107870.2.1	Tomato	extracellular	42.15	39.66
TraesCS4A01G099500.1	Wheat	cytosol	42.15	39.11
TraesCS4D01G205700.1	Wheat	cytosol	41.98	38.9
TraesCS4B01G204800.1	Wheat	cytosol	41.65	38.71
HORVU4Hr1G059070.1	Barley	cytosol	41.82	38.69
CDY57754	Canola	nucleus	13.39	38.03
CDY33264	Canola	mitochondrion, nucleus	12.56	38.0
Solyc12g088720.1.1	Tomato	plastid	41.82	37.99
KXG40160	Sorghum	nucleus	42.81	35.92
Zm00001d047790_P001	Maize	plastid	42.81	35.24
CDY56198	Canola	cytosol	26.61	32.92
CDY30168	Canola	cytosol	29.09	32.71
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	27.11	31.42
Solyc03g118800.2.1	Tomato	nucleus	14.05	23.35
Solyc11g065880.1.1	Tomato	nucleus	15.04	21.82
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	13.88	20.95
Solyc07g042180.2.1	Tomato	nucleus	13.72	20.85
Solyc03g031720.2.1	Tomato	nucleus	13.88	20.74
Solyc10g005260.2.1	Tomato	nucleus	14.05	20.68
Solyc06g063000.2.1	Tomato	nucleus	14.21	20.62
Solyc10g050860.1.1	Tomato	nucleus	14.55	20.56
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	13.88	20.34
Solyc01g108500.2.1	Tomato	nucleus	13.55	19.85
Solyc07g064510.2.1	Tomato	plastid	13.39	19.76
Solyc03g122180.2.1	Tomato	nucleus	13.55	19.66
Solyc04g079310.2.1	Tomato	nucleus	14.55	19.51
Solyc06g062680.1.1	Tomato	cytosol	10.74	12.24

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504
InterPro:IPR002004	InterPro:IPR012677	UniProt:K4CQP8	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	EnsemblPlantsGene:Solyc09g008620.1	EnsemblPlants:Solyc09g008620.1.1	TIGRFAMs:TIGR01628
UniParc:UPI000276C0E4	SEG:seg	:	:	:	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:K4CQP8]

Coordinates

chr9:+:2086687..2092739

Molecular Weight (calculated)

67236.2 Da

IEP (calculated)

9.208

GRAVY (calculated)

-0.441

Length

605 amino acids

Sequence
(BLAST)

001: MASLYVGDLH DSVTDGQLYE AFSEFKNLVN VRVCRDSSTG RSLCYGYVNF ISSEDAVRAI EVKNHSTLNG KAIRVSWSRR DSDVRRSGAG NVFVKNLNDT
101: IDSTKLEEIF QKFGNILSCK VAVSEDGRSK GFGFVQFETE DSANTAIEEL NGSAVGGKEM YVGKFVKKSD RVLPSPDEKY TNLFIKNLGL DISEEHLREK
201: FSEFGKIISL IIAKDENGCS KGFGYVNFEN PDDARRAREA MNGSKLGCKI LYVARAQKKT EREQILRRLF EERRKARLIK YQGSNVYVKN IDGDVKDHEL
301: RELFSRCGKI TSAKLMLDEK GVSRGFGFVC FSRPEEANKA VNTFHGYMLG QKTLYVAIAQ RKEERQTQLL LKHAQGITGL TGSSAFFPGG YSSLYYPALG
401: DLQVSEQPGL LYQPLSMRHG WMVNGFPNSI SPSYQASLIP SASQYRQYKG KKNGHMPVPD VPNWKQSVAS SKQPSYTQVV KYAPNGCGMK KGCVFSAGTS
501: TKGSLSEVSD NLSTMLTDAP PKQQKQILGD HLYPLISEYK PHLAAKVTGM LLEMDNSELL SLFKSPESLA AMVQQAIETL NFPKTEVSPR DSCLPNLLST
601: KLQST

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.