Factsheet for PGSC0003DMT400033802

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008620.1.1	Tomato	cytosol	93.91	94.38
PGSC0003DMT400021673	Potato	cytosol	64.64	62.58
VIT_08s0007g04380.t01	Wine grape	cytosol	62.99	60.41
KRH67800	Soybean	cytosol	62.17	59.81
KRH32613	Soybean	cytosol	47.86	59.51
KRG96088	Soybean	cytosol	61.02	58.33
KRH19986	Soybean	cytosol	47.2	57.98
Bra034301.1-P	Field mustard	mitochondrion	8.72	47.75
AT2G36660.1	Thale cress	cytosol, plastid	47.53	47.45
CDY72408	Canola	plastid	7.24	47.31
GSMUA_Achr9P10860_001	Banana	cytosol	53.78	45.73
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.41	41.73
PGSC0003DMT400039842	Potato	cytosol	40.46	41.0
PGSC0003DMT400066245	Potato	extracellular	42.76	40.44
TraesCS4A01G099500.1	Wheat	cytosol	42.43	39.57
TraesCS4D01G205700.1	Wheat	cytosol	42.27	39.36
TraesCS4B01G204800.1	Wheat	cytosol	41.94	39.17
HORVU4Hr1G059070.1	Barley	cytosol	42.11	39.14
CDY57754	Canola	nucleus	13.32	38.03
CDY33264	Canola	mitochondrion, nucleus	12.5	38.0
PGSC0003DMT400012508	Potato	nucleus	7.73	37.9
PGSC0003DMT400064531	Potato	cytosol	32.07	36.65
KXG40160	Sorghum	nucleus	43.26	36.48
Zm00001d047790_P001	Maize	plastid	43.26	35.78
CDY56198	Canola	cytosol	26.48	32.92
CDY30168	Canola	cytosol	29.11	32.9
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	26.97	31.42
PGSC0003DMT400014744	Potato	nucleus	14.31	23.9
PGSC0003DMT400023075	Potato	nucleus	14.14	23.69
PGSC0003DMT400018998	Potato	nucleus	15.95	23.21
PGSC0003DMT400020621	Potato	nucleus	14.47	22.22
PGSC0003DMT400013036	Potato	nucleus	13.65	20.75
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	13.65	20.7
PGSC0003DMT400029379	Potato	nucleus	13.49	20.5
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	13.98	20.38
PGSC0003DMT400057203	Potato	cytosol	13.32	20.1
PGSC0003DMT400066072	Potato	nucleus	13.49	20.0
PGSC0003DMT400042504	Potato	nucleus	13.49	19.85
PGSC0003DMT400058919	Potato	nucleus	13.49	19.66
PGSC0003DMT400066648	Potato	nucleus	13.49	19.52

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:102581188	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M1AZP8	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	EnsemblPlantsGene:PGSC0003DMG400012988	PGSC:PGSC0003DMG400012988
EnsemblPlants:PGSC0003DMT400033802	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI00029645B2	RefSeq:XP_006366782.1	SEG:seg	:

Description

Polyadenylate-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012988]

Coordinates

chr9:-:4369320..4376418

Molecular Weight (calculated)

67696.0 Da

IEP (calculated)

9.529

GRAVY (calculated)

-0.435

Length

608 amino acids

Sequence
(BLAST)

001: MASLYVGDLH DSVTDGQLYE AFSEFKNLVD VRVCRDSSTG RSLCYGYVNF ISSEDAVRAI EVKNHSTLNG KAIRVSWSRR DSVVRRSGTG NVFIKNLNDV
101: IDSTKLEEIF QKFGNILSCK VAVSEDGRSK GFGFVQFETE DSANTAIEEL NGSAVGGKEM YVGKFVKKSD RILPSPDEKY TNLFIKNLGL DISEEHLREK
201: FSEFGKIISL VISKDENGCS KGFGYVNFEN PDDARRAREA MNGSKLGCKI LYVARAQKKT EREQILRRLF EERRKARLIK YQGSNVYVKN IDGDVKDHEL
301: RELFSQCGKI TSAKLMLDEK GVSRGFGFVC FSRPEEANKA VNTFHGFMFG QKPLYVAIAQ RKEERQTQLL LKHAQGIAGL TRSSAFFPGG YPPLYYPALG
401: DLQVSEQPGL LYQPLSMRHG WMVNGFANSI RPSYQTSLIP SASQYRQNRG KKNGHMPVPD VPYWQQSVQS VASSKQSSYT QKVKYAPNGC GMKKGCVFSP
501: GTSTKGSLSE VSDNLSTMLT AAPPKQQKQI LGDHLYPLIS QHKPHLAAKV TGMLLEMDNS ELLSLFKSPE SLAAMVQKAV EMLNLPKTEV SPRDSCLPNL
601: LSAKLQST

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.