Factsheet for PGSC0003DMT400064531

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22760.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT1G22760.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT1G22760.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT1G22760.1	PGSC0003DMT400069515	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02490.t01	Wine grape	plastid	71.05	57.36
KRG91724	Soybean	cytosol	66.73	54.45
PGSC0003DMT400039842	Potato	cytosol	59.77	53.0
PGSC0003DMT400012508	Potato	nucleus	11.84	50.81
KRH08608	Soybean	endoplasmic reticulum	61.65	49.25
GSMUA_Achr5P24940_001	Banana	plastid	60.71	48.5
KRH70233	Soybean	cytosol	57.33	48.49
PGSC0003DMT400066245	Potato	extracellular	57.33	47.43
Bra016371.1-P	Field mustard	plastid	50.19	44.87
AT1G22760.1	Thale cress	nucleus, plastid	54.89	44.24
CDY41472	Canola	cytosol, plastid	52.82	43.84
CDX96344	Canola	plastid	55.45	43.13
Bra016118.1-P	Field mustard	plastid	55.45	43.13
CDX72826	Canola	plastid	55.26	42.98
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.5	42.28
Bra003915.1-P	Field mustard	cytosol	51.5	42.28
AT1G71770.1	Thale cress	cytosol, plastid	54.14	42.23
CDY37935	Canola	nucleus	51.5	42.09
Bra007984.1-P	Field mustard	plastid	49.25	41.99
CDY03685	Canola	nucleus	50.38	41.68
CDY36684	Canola	plastid	51.88	41.5
PGSC0003DMT400021673	Potato	cytosol	38.91	32.96
PGSC0003DMT400033802	Potato	cytosol	36.65	32.07
PGSC0003DMT400020621	Potato	nucleus	14.1	18.94
PGSC0003DMT400018998	Potato	nucleus	14.85	18.9
PGSC0003DMT400023075	Potato	nucleus	11.65	17.08
PGSC0003DMT400014744	Potato	nucleus	11.65	17.03
PGSC0003DMT400066648	Potato	nucleus	13.16	16.67
PGSC0003DMT400057203	Potato	cytosol	12.59	16.63
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	12.59	16.07
PGSC0003DMT400066072	Potato	nucleus	12.22	15.85
PGSC0003DMT400058919	Potato	nucleus	12.03	15.35
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	11.47	15.21
PGSC0003DMT400013036	Potato	nucleus	11.28	15.0
PGSC0003DMT400042504	Potato	nucleus	11.47	14.77
PGSC0003DMT400029379	Potato	nucleus	10.9	14.5

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M1CCI5	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	EnsemblPlantsGene:PGSC0003DMG400025074	PGSC:PGSC0003DMG400025074
EnsemblPlants:PGSC0003DMT400064531	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI00029699B4	SEG:seg	:	:

Description

Polyadenylate-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025074]

Coordinates

chr4:+:61474172..61476805

Molecular Weight (calculated)

58789.9 Da

IEP (calculated)

8.913

GRAVY (calculated)

-0.486

Length

532 amino acids

Sequence
(BLAST)

001: MRIMFSHRDP SLRKSGYANV FIKNLDSSID NKALQDTFGA FGTVLSCKVA VDSSGQSKGY GFVQFDQDEA AQKAINRLNG MLINDKQVYV GYFIRGQERR
101: GTVCDKFTNV YVKNLPESTS DEDLKKLFEK YGTITSALVM TDSSGKSRGF GFVNFETWNA AASAVVELNG SSLNEKVLYV GKAQKKSERE ADLRVKFEQE
201: RASRFEKLKG ANLYLKNLDD SVNDENLKEL FVEYGTITSC KVMRDAKGSS KGSGFVAFST PEEATRALNE MNGKLIGRKP LFVAVAQRKD ERRVWLQTHF
301: ARMRPTGLMT PPPGGMPGYH TGAPRLAPPQ VYFSQGVATQ AAGFGFQQQF MPGLRPGVGP NFFLPYQFQH HQGQHGRIGG RRGGYPQQQH QWSSGQFNPN
401: GRNGMHPSIP QGMMGSIMRA PFDASSAMTT PPLDIQRSNP VPPSTLASSL AFASPEDQHA MLGEQLFPLV EHIERDHAGK VTGMLLEMDQ TEVLHLIESP
501: DALKEKVSEA MDVLRVEPDS VGDKFGSLTL NE

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.