Factsheet for PGSC0003DMT400042504

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	97.34	97.34
PGSC0003DMT400029379	Potato	nucleus	79.66	82.25
PGSC0003DMT400013036	Potato	nucleus	78.21	80.75
KRH51075	Soybean	endoplasmic reticulum	63.92	66.5
KRH02082	Soybean	nucleus	63.2	64.93
KRH20867	Soybean	nucleus	62.71	63.33
PGSC0003DMT400057203	Potato	cytosol	61.26	62.78
KRH11417	Soybean	nucleus	61.74	62.04
CDY34835	Canola	nucleus	57.87	60.81
Bra031774.1-P	Field mustard	nucleus	56.9	59.64
TraesCS7A01G295700.3	Wheat	plastid	44.55	59.16
AT1G11650.2	Thale cress	nucleus	57.14	58.27
Os08t0190200-00	Rice	nucleus	60.05	56.11
Os04t0625800-01	Rice	nucleus	57.63	56.0
TraesCS6D01G081700.2	Wheat	plastid	55.45	55.85
TraesCS6A01G100800.1	Wheat	nucleus	55.45	55.85
TraesCS6B01G128900.2	Wheat	plastid	55.93	55.4
TraesCS7B01G199000.1	Wheat	nucleus, plastid	55.69	54.63
KXG27152	Sorghum	nucleus	57.38	54.61
Zm00001d049416_P001	Maize	extracellular, nucleus	59.32	53.73
KXG24662	Sorghum	nucleus	59.08	53.51
Zm00001d026346_P002	Maize	extracellular	55.21	53.27
TraesCS2D01G472700.1	Wheat	nucleus	55.93	52.98
TraesCS2B01G495700.1	Wheat	nucleus	55.93	52.98
TraesCS2A01G473000.1	Wheat	nucleus	55.69	52.75
Zm00001d002244_P003	Maize	nucleus	56.9	52.46
PGSC0003DMT400020621	Potato	nucleus	47.7	49.75
PGSC0003DMT400066648	Potato	nucleus	49.15	48.33
CDY34639	Canola	nucleus, plastid, vacuole	58.11	47.34
PGSC0003DMT400018998	Potato	nucleus	47.7	47.13
HORVU7Hr1G066510.3	Barley	plastid	49.64	46.91
HORVU2Hr1G106810.1	Barley	nucleus	51.33	45.89
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	25.91	25.66
PGSC0003DMT400066072	Potato	nucleus	25.42	25.61
PGSC0003DMT400058919	Potato	nucleus	25.67	25.42
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	24.46	25.19
PGSC0003DMT400012508	Potato	nucleus	5.81	19.35
PGSC0003DMT400023075	Potato	nucleus	15.25	17.36
PGSC0003DMT400014744	Potato	nucleus	15.01	17.03
PGSC0003DMT400066245	Potato	extracellular	23.24	14.93
PGSC0003DMT400039842	Potato	cytosol	20.82	14.33
PGSC0003DMT400033802	Potato	cytosol	19.85	13.49
PGSC0003DMT400021673	Potato	cytosol	20.34	13.38
PGSC0003DMT400064531	Potato	cytosol	14.77	11.47
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.42	8.0

Protein Annotations

EntrezGene:102592119	MapMan:16.9.4	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BD53	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400016485	PGSC:PGSC0003DMG400016485	EnsemblPlants:PGSC0003DMT400042504	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002958158	RefSeq:XP_006348103.1
SEG:seg	:	:	:	:	:

Description

Nuclear acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016485]

Coordinates

chr2:+:36229711..36235709

Molecular Weight (calculated)

45759.1 Da

IEP (calculated)

5.967

GRAVY (calculated)

-0.763

Length

413 amino acids

Sequence
(BLAST)

001: MQPANSMVPP PQYQQTQQWM AQQPPQYQVA PPQQLGYYYQ QPPQQGGVPP PQQQQPQYNA SGLAATTGSV QPTSVDEIRS LWIGDLQFWM DEQYILNCFA
101: QTGEVTSAKV IRNKQSGQSE GYGFIEFISH AAAERNLQAY NGTLMPNIEQ NFRLNWASLG SGEKRSDNGP EHTIFVGDLA ADVSDYMLQE TFRANYPSVK
201: GAKVVTDKAT GRTKGYGFVK FGDESEQLRA MTEMNGQFCS TRPMRIGPAA NKKSMGGQSQ ASYQSSPGTQ NEDDPSNTTI FVGNLDSNIT DEHLRQIFGH
301: YGQLLHVKIP VGKRCGFIQF ADRSCAEEAI RVLNGTQLGG QSIRLSWGRS PANKQQPQVD PNQYAGYYGY TAGYDGYGYA PPAQDPNQYY AGYAGYGNYA
401: QPQQQQQVLQ HPQ

Best Arabidopsis Sequence Match ( AT4G27000.1 )
(BLAST)

001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ

Arabidopsis Description

RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.