Factsheet for Zm00001d026346_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27152	Sorghum	nucleus	94.39	93.09
Zm00001d002244_P003	Maize	nucleus	94.63	90.4
Os04t0625800-01	Rice	nucleus	84.58	85.18
TraesCS2D01G472700.1	Wheat	nucleus	82.71	81.19
TraesCS2A01G473000.1	Wheat	nucleus	82.48	80.96
TraesCS2B01G495700.1	Wheat	nucleus	82.48	80.96
Zm00001d049416_P001	Maize	extracellular, nucleus	77.8	73.03
KRH20867	Soybean	nucleus	61.45	64.3
KRH11417	Soybean	nucleus	60.98	63.5
Zm00001d013812_P001	Maize	nucleus	60.05	63.3
KRH51075	Soybean	endoplasmic reticulum	58.41	62.97
HORVU2Hr1G106810.1	Barley	nucleus	67.76	62.77
KRH02082	Soybean	nucleus	58.41	62.19
AT1G11650.2	Thale cress	nucleus	54.91	58.02
Solyc03g031720.2.1	Tomato	nucleus	54.91	58.02
CDY34835	Canola	nucleus	53.04	57.76
PGSC0003DMT400029379	Potato	nucleus	53.5	57.25
PGSC0003DMT400013036	Potato	nucleus	53.27	57.0
Solyc10g005260.2.1	Tomato	nucleus	54.67	56.93
Bra031774.1-P	Field mustard	nucleus	52.1	56.6
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	54.21	56.17
PGSC0003DMT400042504	Potato	nucleus	53.27	55.21
Zm00001d009512_P001	Maize	mitochondrion	16.12	52.27
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	16.59	50.0
Zm00001d010739_P001	Maize	mitochondrion	14.25	49.19
Zm00001d021633_P006	Maize	nucleus	52.8	48.6
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	46.73	47.17
Zm00001d020748_P002	Maize	plasma membrane	46.5	45.96
CDY34639	Canola	nucleus, plastid, vacuole	52.57	44.38
Zm00001d021149_P001	Maize	cytosol	16.59	43.03
Zm00001d006496_P004	Maize	nucleus	54.44	42.91
Zm00001d050838_P001	Maize	plastid	42.99	42.79
Zm00001d007929_P002	Maize	nucleus	35.05	41.78
Zm00001d025551_P002	Maize	plastid	42.99	40.71
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	42.52	38.4
Zm00001d016252_P001	Maize	nucleus	33.41	38.03
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	17.29	27.61
Zm00001d026528_P001	Maize	plastid	12.15	23.64
Zm00001d027869_P002	Maize	nucleus	41.59	23.33
Zm00001d031525_P004	Maize	nucleus	24.77	22.75
Zm00001d048824_P004	Maize	nucleus	22.9	21.92
Zm00001d049759_P003	Maize	nucleus	21.73	20.31
Zm00001d026522_P001	Maize	nucleus	10.98	19.26
Zm00001d014094_P002	Maize	extracellular, plasma membrane	13.79	16.53
Zm00001d032807_P001	Maize	nucleus	13.08	15.6
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	23.6	15.49
Zm00001d019824_P004	Maize	cytosol	23.6	15.4
Zm00001d025801_P005	Maize	cytosol, plastid	23.36	15.34
Zm00001d005276_P007	Maize	cytosol	23.36	15.29
Zm00001d046487_P001	Maize	cytosol	20.56	13.69
Zm00001d047790_P001	Maize	plastid	19.16	11.16
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.64	5.6

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	ProteinID:AQK46326.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7U6V4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000196258A	EnsemblPlantsGene:Zm00001d026346	EnsemblPlants:Zm00001d026346_P002	EnsemblPlants:Zm00001d026346_T002	SEG:seg

Description

Polyadenylate-binding protein RBP45C

Coordinates

chr10:+:143957324..143961926

Molecular Weight (calculated)

46655.8 Da

IEP (calculated)

5.427

GRAVY (calculated)

-0.618

Length

428 amino acids

Sequence
(BLAST)

001: MMQQPPQPQP GMALPPPPQT GGGQPPQWGA IPPPMTQQYG APPPQQPPAM WGQPPSQAHY GQAPPPQPYY AAPPVPAAPA AADEVRTLWI GDLQYWMDDN
101: YVFGCFSNTG EVQNVKLIRD KNSGQLQGYG FVEFTSRAAA ERVLQTYNGQ MMPNVDLTFR LNWASAGEKR DDTPDYTIFV GDLAADVTDY LLQETFRVHY
201: PSVKGAKVVT DKLTMRTKGY GFVKFGDPTE QARAMTEMNG MPCSSRPMRI GPAASRKNAG GVVQERVPNS QGAQSENDPN NTTIFVGGLD PNVTEDVLKQ
301: AFSPYGEVIH VKIPVGKRCG FVQFVTRPSA EQALLMLQGA LIGAQNVRLS WGRSLSNKQT QPQQESMQWG AGAPAGVGDY YGGYGQGYEA YGSGYAQPQD
401: PNMYGYGAYV GYPNYQQQPA AQQPQQQQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.