CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51075	Soybean	endoplasmic reticulum	96.52	97.73
KRH20867	Soybean	nucleus	88.56	87.04
KRH11417	Soybean	nucleus	87.06	85.16
PGSC0003DMT400029379	Potato	nucleus	67.16	67.5
Solyc10g005260.2.1	Tomato	nucleus	68.16	66.67
CDY34835	Canola	nucleus	62.94	64.38
PGSC0003DMT400013036	Potato	nucleus	63.93	64.25
Solyc03g031720.2.1	Tomato	nucleus	64.68	64.2
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	65.42	63.68
AT1G11650.2	Thale cress	nucleus	63.93	63.46
Bra031774.1-P	Field mustard	nucleus	62.19	63.45
PGSC0003DMT400042504	Potato	nucleus	64.93	63.2
TraesCS7A01G295700.3	Wheat	plastid	47.01	60.77
Os08t0190200-00	Rice	nucleus	66.17	60.18
Os04t0625800-01	Rice	nucleus	63.43	60.0
TraesCS6A01G100800.1	Wheat	nucleus	60.95	59.76
TraesCS6D01G081700.2	Wheat	plastid	60.95	59.76
KXG27152	Sorghum	nucleus	63.18	58.53
Zm00001d026346_P002	Maize	extracellular	62.19	58.41
TraesCS6B01G128900.2	Wheat	plastid	60.45	58.27
TraesCS7B01G199000.1	Wheat	nucleus, plastid	60.45	57.72
TraesCS2A01G473000.1	Wheat	nucleus	62.19	57.34
KXG24662	Sorghum	nucleus	64.93	57.24
TraesCS2D01G472700.1	Wheat	nucleus	61.94	57.11
Zm00001d049416_P001	Maize	extracellular, nucleus	64.68	57.02
TraesCS2B01G495700.1	Wheat	nucleus	61.69	56.88
Zm00001d002244_P003	Maize	nucleus	62.94	56.47
KRH61258	Soybean	nucleus	52.49	51.59
KRH50251	Soybean	nucleus	54.98	51.28
KRH05723	Soybean	nucleus	52.49	51.09
KRH71168	Soybean	nucleus	54.73	51.04
HORVU7Hr1G066510.3	Barley	plastid	54.48	50.11
CDY34639	Canola	nucleus, plastid, vacuole	63.18	50.1
HORVU2Hr1G106810.1	Barley	nucleus	57.21	49.78
KRH15315	Soybean	nucleus	52.24	49.41
KRH51956	Soybean	nucleus	50.0	48.91
KRH23136	Soybean	cytosol	50.0	47.97
KRH29709	Soybean	cytosol	46.77	46.88
KRH24702	Soybean	nucleus	45.52	45.64
KRH10201	Soybean	mitochondrion, nucleus, plastid	28.36	38.78
KRH52613	Soybean	nucleus	30.35	28.05
KRH61952	Soybean	mitochondrion	29.35	27.76
KRH47641	Soybean	nucleus	29.1	27.73
KRH06218	Soybean	nucleus	28.36	27.4
KRH02581	Soybean	mitochondrion	26.62	25.91
KRH19347	Soybean	mitochondrion, nucleus	26.37	25.85
KRH27525	Soybean	nucleus	15.42	17.03
KRH36396	Soybean	endoplasmic reticulum	15.42	16.99
KRH19986	Soybean	cytosol	20.9	16.97
KRH32613	Soybean	cytosol	20.4	16.77
KRH15385	Soybean	nucleus	24.63	15.18
KRH05656	Soybean	endoplasmic reticulum, nucleus	24.63	15.14
KRH67800	Soybean	cytosol	23.63	15.03
KRH61326	Soybean	cytosol, endoplasmic reticulum	23.38	14.92
KRH52023	Soybean	cytosol, endoplasmic reticulum	23.38	14.92
KRH70673	Soybean	nucleus	23.88	14.81
KRG96088	Soybean	cytosol	23.13	14.62
KRH50336	Soybean	cytosol	23.63	14.59
KRH70233	Soybean	cytosol	22.64	14.47
KRG91724	Soybean	cytosol	22.64	13.96
KRH08608	Soybean	endoplasmic reticulum	21.64	13.06
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.99	6.4

Protein Annotations

EntrezGene:100796848	MapMan:16.9.4	Gene3D:3.30.70.330	EMBL:ACUP02010293	EnsemblPlantsGene:GLYMA_17G014800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MR65	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH02082	ProteinID:KRH02082	ProteinID:KRH02082.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43955	PANTHER:PTHR43955:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000233E949	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:1103986..1108183

Molecular Weight (calculated)

44434.5 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.794

Length

402 amino acids

Sequence
(BLAST)

001: MMQAGPGGMA QQANQQYAQQ QQQQQQQAYM MMPPQPQPPQ MWAPSAQPPS QSVAPPQPTS ADEVRTLWIG DLQYWMDENY LYTCFAHTGE LASVKVIRNK
101: QTSQSEGYGF IEFTSRAGAE RVLQTYNGTI MPNGGQNFRL NWATFSAGER RHDDSPDHTI FVGDLAADVT DYLLQETFRA RYPSAKGAKV VIDRLTGRTK
201: GYGFVRFGDE SEQVRAMSEM QGVLCSTRPM RIGPASNKNP STQSQPKASY QNPQGAQNEH DPNNTTIFVG NLDPNVTDDH LRQVFGQYGE LVHVKIPAGK
301: RCGFVQFADR SCAEEALRVL NGTLLGGQNV RLSWGRSPSN KQAQPDANQW NGSGGGGYYG YAQGGYENYG YAPAGQDPNM YGSYPGYANY QPPQQPQQIG
401: YS

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.