CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15385	Soybean	nucleus	95.72	96.01
VIT_18s0001g10170.t01	Wine grape	cytosol	80.28	82.03
PGSC0003DMT400039842	Potato	cytosol	75.08	81.83
KRH70673	Soybean	nucleus	78.75	79.48
Solyc12g088720.1.1	Tomato	plastid	80.89	79.43
KRH50336	Soybean	cytosol	78.75	79.11
KRH52023	Soybean	cytosol, endoplasmic reticulum	74.46	77.3
KRH61326	Soybean	cytosol, endoplasmic reticulum	73.09	75.87
GSMUA_Achr9P00990_001	Banana	cytosol	73.85	74.19
GSMUA_Achr4P09890_001	Banana	cytosol	72.78	73.01
GSMUA_AchrUn_...	Banana	cytosol	71.56	71.78
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	65.9	70.54
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	70.18	69.55
Os04t0504800-01	Rice	plasma membrane	69.42	68.89
Os09t0115400-01	Rice	nucleus	69.72	68.88
Zm00001d025801_P005	Maize	cytosol, plastid	68.65	68.86
TraesCS7D01G287900.1	Wheat	cytosol	67.13	68.81
GSMUA_Achr4P20270_001	Banana	cytosol	67.58	68.74
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	68.5	68.71
EES12460	Sorghum	plastid	68.81	67.77
KXG35258	Sorghum	cytosol	67.74	67.53
TraesCS5B01G159400.1	Wheat	cytosol	66.97	67.28
TraesCS5A01G161800.2	Wheat	nucleus	66.82	67.13
TraesCS5D01G167000.1	Wheat	nucleus, unclear	66.82	67.13
Zm00001d005276_P007	Maize	cytosol	67.13	67.13
TraesCS7A01G288700.1	Wheat	nucleus	67.58	66.77
TraesCS2B01G378400.1	Wheat	nucleus	67.89	66.77
TraesCS2A01G359000.1	Wheat	cytosol	67.74	66.62
TraesCS2D01G358000.1	Wheat	cytosol	67.58	66.57
Zm00001d019824_P004	Maize	cytosol	66.67	66.46
HORVU5Hr1G050560.1	Barley	plastid	67.13	62.54
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	67.28	61.45
TraesCS7B01G182800.3	Wheat	cytosol	62.23	60.3
KRG91724	Soybean	cytosol	58.41	58.59
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	57.34	57.87
KRH08608	Soybean	endoplasmic reticulum	56.42	55.41
KRH70233	Soybean	cytosol	52.75	54.85
GSMUA_Achr7P05430_001	Banana	nucleus	70.64	51.11
KRH32613	Soybean	cytosol	32.72	43.76
KRH67800	Soybean	cytosol	42.05	43.51
KRG96088	Soybean	cytosol	42.2	43.4
KRH19986	Soybean	cytosol	31.96	42.22
CDX91689	Canola	nucleus	16.21	34.75
KRH36396	Soybean	endoplasmic reticulum	16.97	30.41
KRH27525	Soybean	nucleus	16.82	30.22
KRH29709	Soybean	cytosol	16.67	27.18
KRH10201	Soybean	mitochondrion, nucleus, plastid	12.08	26.87
KRH24702	Soybean	nucleus	16.36	26.68
KRH23136	Soybean	cytosol	16.51	25.78
KRH20867	Soybean	nucleus	15.6	24.94
KRH51075	Soybean	endoplasmic reticulum	15.14	24.94
KRH11417	Soybean	nucleus	15.6	24.82
KRH02082	Soybean	nucleus	15.14	24.63
KRH02581	Soybean	mitochondrion	14.68	23.24
KRH61258	Soybean	nucleus	14.37	22.98
KRH19347	Soybean	mitochondrion, nucleus	14.37	22.93
KRH06218	Soybean	nucleus	14.53	22.84
KRH05723	Soybean	nucleus	14.37	22.76
KRH47641	Soybean	nucleus	14.53	22.51
KRH71168	Soybean	nucleus	14.83	22.51
KRH51956	Soybean	nucleus	14.07	22.38
KRH61952	Soybean	mitochondrion	14.53	22.35
KRH52613	Soybean	nucleus	14.68	22.07
KRH15315	Soybean	nucleus	14.07	21.65
KRH50251	Soybean	nucleus	14.22	21.58

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100811385	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02010766	EnsemblPlantsGene:GLYMA_17G240400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	UniProt:I1MXM6	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
EnsemblPlants:KRH05656	ProteinID:KRH05656	ProteinID:KRH05656.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000233E68A	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:39597803..39603019

Molecular Weight (calculated)

71930.0 Da

IEP (calculated)

7.181

GRAVY (calculated)

-0.457

Length

654 amino acids

Sequence
(BLAST)

001: MAEIQVQHQS PVSAAPPPNG GVANAPNNAN QFVTTSLYVG DLDQNVNDSQ LYDLFNQVGQ VVSVRVCRDL TTRRSLGYGY VNFSNPQDAA RALDVLNFTP
101: LNNRSIRIMY SHRDPSLRKS GTANIFIKNL DKAIDHKALH DTFSSFGLIL SCKIATDASG LSKGYGFVQF DNEEAAQNAI DKLNGMLIND KQVYVGHFLR
201: KQDRENALSK TKFNNVYVKN LSESTTDEEL MINFGEYGTI TSALIMRDAD GKSRCFGFVN FENPDDAAKA VEGLNGKKFD DKEWYVGKAQ KKSEREQELK
301: GRFEQSIKEA ADKYPGLNLY LKNLDDTISD EKLKEMFADY GTITSCKVMR DPTGISRGSG FVAFSTPEEA TRALGEMNGK MFAGKPLYVA LAQRKEERRA
401: RLQAQFSQMR PVAITPSVAP RMPLYPPGAP GLGQQFLYGQ GPPAMMPPQA GFGYQQQLVP GMRPGGGPMP SFFVPMVQQG QQGQRPVGRR GTGPVQQPQQ
501: PMPMMQQQML PRGRVYRYPP GRNMQDVPLQ VAAGGMLSVP YDMGGLPMRD AVGQPMPIQA LATALANAPP EQQRTMLGEA LYPLVDQLEH DSAAKVTGML
601: LEMDQPEVLH LIESPDALKA KVAEAMDVLR NVAQQQTNPA DQLASLSLND NLVS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.