CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19986	Soybean	cytosol	91.41	90.3
KRH67800	Soybean	cytosol	70.76	54.75
KRG96088	Soybean	cytosol	69.73	53.62
VIT_08s0007g04380.t01	Wine grape	cytosol	66.87	51.58
PGSC0003DMT400021673	Potato	cytosol	62.99	49.04
Solyc10g085750.1.1	Tomato	nucleus	62.17	48.87
PGSC0003DMT400033802	Potato	cytosol	59.51	47.86
Solyc09g008620.1.1	Tomato	cytosol	58.08	46.94
Bra034301.1-P	Field mustard	mitochondrion	9.82	43.24
CDY72408	Canola	plastid	7.98	41.94
AT2G36660.1	Thale cress	cytosol, plastid	50.51	40.56
CDY33264	Canola	mitochondrion, nucleus	15.13	37.0
GSMUA_Achr9P10860_001	Banana	cytosol	52.97	36.22
CDY57754	Canola	nucleus	15.54	35.68
TraesCS4A01G099500.1	Wheat	cytosol	47.24	35.43
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.83	35.39
TraesCS4D01G205700.1	Wheat	cytosol	47.24	35.38
TraesCS4B01G204800.1	Wheat	cytosol	47.03	35.33
HORVU4Hr1G059070.1	Barley	cytosol	47.24	35.32
KRH52023	Soybean	cytosol, endoplasmic reticulum	44.38	34.44
KRH61326	Soybean	cytosol, endoplasmic reticulum	44.17	34.29
KRH70673	Soybean	nucleus	45.4	34.26
KRH50336	Soybean	cytosol	44.99	33.79
KRH15385	Soybean	nucleus	43.97	32.98
KRH70233	Soybean	cytosol	42.33	32.91
KRH05656	Soybean	endoplasmic reticulum, nucleus	43.76	32.72
KRH08608	Soybean	endoplasmic reticulum	43.56	31.98
KXG40160	Sorghum	nucleus	46.83	31.76
KRG91724	Soybean	cytosol	42.33	31.75
Zm00001d047790_P001	Maize	plastid	47.24	31.43
CDY30168	Canola	cytosol	32.92	29.93
CDY56198	Canola	cytosol	29.86	29.86
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	29.65	27.78
KRH36396	Soybean	endoplasmic reticulum	17.38	23.29
KRH27525	Soybean	nucleus	16.97	22.8
KRH71168	Soybean	nucleus	18.4	20.88
KRH20867	Soybean	nucleus	17.38	20.78
KRH11417	Soybean	nucleus	17.38	20.68
KRH51075	Soybean	endoplasmic reticulum	16.77	20.65
KRH02082	Soybean	nucleus	16.77	20.4
KRH19347	Soybean	mitochondrion, nucleus	16.97	20.24
KRH61952	Soybean	mitochondrion	17.59	20.24
KRH24702	Soybean	nucleus	16.56	20.2
KRH50251	Soybean	nucleus	17.79	20.19
KRH61258	Soybean	nucleus	16.77	20.05
KRH52613	Soybean	nucleus	17.79	20.0
KRH29709	Soybean	cytosol	16.36	19.95
KRH05723	Soybean	nucleus	16.77	19.85
KRH02581	Soybean	mitochondrion	16.77	19.85
KRH06218	Soybean	nucleus	16.56	19.47
KRH51956	Soybean	nucleus	16.16	19.22
KRH15315	Soybean	nucleus	16.56	19.06
KRH47641	Soybean	nucleus	16.36	18.96
KRH23136	Soybean	cytosol	16.16	18.85
KRH10201	Soybean	mitochondrion, nucleus, plastid	11.04	18.37

Protein Annotations

EntrezGene:100798828	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02006139	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G063700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1L949	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH32613	ProteinID:KRH32613	ProteinID:KRH32613.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP_1234
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	TIGRFAMs:TIGR01628	UniParc:UPI0002964B0B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:6027290..6032011

Molecular Weight (calculated)

54927.4 Da

IEP (calculated)

9.891

GRAVY (calculated)

-0.487

Length

489 amino acids

Sequence
(BLAST)

001: MAVPATVAAV PASLYVGDLH SEVVDHHLFE AFAEFKTMDS VRVCRDRVTM KSLCYGYVNF KSQQDAIRAM KLKNNSYLNG KVIRVMWSHP DPSARKSGRG
101: NVFVKNLAGS IDNAGLHDLF QKYGNILSSK VVMSGDGKSK GYGFVQFESE ESANNAIEKL NGSTVGDKQI YVGKFVRKGD RILPGYDAKY TNLYIKNLDS
201: DITEALLQEK FSSFGKIISL VISKDDNGLS KGFAFVNYEN PDDARKAMEA MNGLKFGSKN LYVARAQKKA EREQILHRQF EEKRKEQILK YQASNLYVKN
301: IDDDVTDKEL RDLFSSCGTI TSVKVMRDDK GISKGFGFVC FSNPEEANKA VRSFNGCMFH RKPLYIAIAQ RKMDRKTQLN LHYAPQQTGL DGSSTPVIPG
401: GFPPYFYHSV ASQMFQSGLL YQPLGLRSGW RANDSVPPTR SFQQSQVPNF TRHHRQNRSR MNGNVNSLGK AHSGVYIPQY YQAVEYLAV

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.