CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61326	Soybean	cytosol, endoplasmic reticulum	92.86	92.86
KRH15385	Soybean	nucleus	78.1	75.46
VIT_18s0001g10170.t01	Wine grape	cytosol	76.51	75.31
KRH05656	Soybean	endoplasmic reticulum, nucleus	77.3	74.46
PGSC0003DMT400039842	Potato	cytosol	70.16	73.67
Solyc12g088720.1.1	Tomato	plastid	74.76	70.72
KRH70673	Soybean	nucleus	72.38	70.37
KRH50336	Soybean	cytosol	72.54	70.2
GSMUA_Achr4P09890_001	Banana	cytosol	69.52	67.18
GSMUA_AchrUn_...	Banana	cytosol	69.37	67.02
GSMUA_Achr9P00990_001	Banana	cytosol	69.21	66.97
TraesCS7D01G287900.1	Wheat	cytosol	66.35	65.52
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	62.7	64.65
GSMUA_Achr4P20270_001	Banana	cytosol	65.71	64.39
Os09t0115400-01	Rice	nucleus	67.3	64.05
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	66.67	63.64
TraesCS7A01G288700.1	Wheat	nucleus	66.67	63.44
TraesCS5B01G159400.1	Wheat	cytosol	65.4	63.29
TraesCS5A01G161800.2	Wheat	nucleus	65.24	63.13
TraesCS5D01G167000.1	Wheat	nucleus, unclear	65.24	63.13
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	65.08	62.88
Zm00001d025801_P005	Maize	cytosol, plastid	64.76	62.58
Os04t0504800-01	Rice	plasma membrane	65.4	62.52
KXG35258	Sorghum	cytosol	64.92	62.35
EES12460	Sorghum	plastid	65.24	61.9
TraesCS2A01G359000.1	Wheat	cytosol	65.24	61.8
Zm00001d005276_P007	Maize	cytosol	64.13	61.77
TraesCS2D01G358000.1	Wheat	cytosol	64.76	61.45
Zm00001d019824_P004	Maize	cytosol	63.97	61.43
TraesCS2B01G378400.1	Wheat	nucleus	64.76	61.35
HORVU5Hr1G050560.1	Barley	plastid	65.08	58.4
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	66.35	58.38
TraesCS7B01G182800.3	Wheat	cytosol	61.9	57.78
KRG91724	Soybean	cytosol	58.1	56.13
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	54.76	53.24
KRH70233	Soybean	cytosol	52.06	52.15
KRH08608	Soybean	endoplasmic reticulum	54.29	51.35
GSMUA_Achr7P05430_001	Banana	nucleus	67.62	47.12
KRH32613	Soybean	cytosol	34.44	44.38
KRH67800	Soybean	cytosol	44.29	44.15
KRG96088	Soybean	cytosol	44.44	44.03
KRH19986	Soybean	cytosol	33.33	42.42
CDX91689	Canola	nucleus	16.19	33.44
KRH27525	Soybean	nucleus	16.98	29.4
KRH36396	Soybean	endoplasmic reticulum	16.98	29.32
KRH29709	Soybean	cytosol	16.83	26.43
KRH24702	Soybean	nucleus	16.51	25.94
KRH10201	Soybean	mitochondrion, nucleus, plastid	12.06	25.85
KRH23136	Soybean	cytosol	16.51	24.82
KRH51075	Soybean	endoplasmic reticulum	14.92	23.68
KRH20867	Soybean	nucleus	15.24	23.47
KRH02082	Soybean	nucleus	14.92	23.38
KRH11417	Soybean	nucleus	15.24	23.36
KRH61258	Soybean	nucleus	14.92	22.98
KRH05723	Soybean	nucleus	14.92	22.76
KRH51956	Soybean	nucleus	14.76	22.63
KRH71168	Soybean	nucleus	15.24	22.27
KRH15315	Soybean	nucleus	14.6	21.65
KRH50251	Soybean	nucleus	14.76	21.58
KRH02581	Soybean	mitochondrion	13.97	21.31
KRH19347	Soybean	mitochondrion, nucleus	13.33	20.49
KRH06218	Soybean	nucleus	13.49	20.43
KRH47641	Soybean	nucleus	13.65	20.38
KRH52613	Soybean	nucleus	13.65	19.77
KRH61952	Soybean	mitochondrion	13.33	19.76

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100778879	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02003402	EnsemblPlantsGene:GLYMA_06G041700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	UniProt:I1K813	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
EnsemblPlants:KRH52023	ProteinID:KRH52023	ProteinID:KRH52023.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0002339CD1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:3147768..3152655

Molecular Weight (calculated)

68571.5 Da

IEP (calculated)

6.689

GRAVY (calculated)

-0.372

Length

630 amino acids

Sequence
(BLAST)

001: MAHIPQTPTN DAAASGANPS MTTISLYVGD LDHDVNDPQL YDLFNQVAQV VSVRICRDVA TQQSLGYGYV NFSNARDAAK AIDVLNFTPL NGKTIRIMYS
101: IRDPSARKSG AANVFIKNLD KAIDHKALFD TFSAFGNILS CKIATDASGQ SKGHGFVQFE SEESAQNAID KLNGMLINDK QVYVGPFQRK QDRESALSGT
201: KFNNVYVKNL FEATTEADLK SIFGEYGAIT SAVVMRDVDG KSKGFGFVNF ANVEDAAKAV EALNGKNFDG KEWYVGKAQK KSERELELKE RNEQSTKETV
301: DKYHGTNLYI KNLDDSVGDE ELRELFSEFG TITSCKVMRD PSGISRGSGF VAFSIAEGAS WALGEMNGKM VAGKPLYVAL AQRKEDRRAR LQAQFSQARP
401: VAITPNVSPR MPLYPLGAPG IGQQLLYGQA APSMIPQAAF GYQQHFVPGM RPGGAPNFYV PLVQQGQQGQ RSGGQRGAGP MQQLQQPLPL MHQQMLPRGH
501: VYRYPPGSNM QNIQLAGVPG GMVSYGIGQP MPTQALASAL ANATPEQQRT MLGEALYPLV DKLEHETAAK VTGMLLEMDQ PEVLHLIESP DALKAKVVEA
601: MDVLRKVTQQ QSNSPADQLA SLSLNDNVES

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.