CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67800	Soybean	cytosol	94.03	94.62
VIT_08s0007g04380.t01	Wine grape	cytosol	70.91	71.14
KRH32613	Soybean	cytosol	53.62	69.73
KRH19986	Soybean	cytosol	53.93	69.29
Solyc10g085750.1.1	Tomato	nucleus	66.51	68.01
PGSC0003DMT400021673	Potato	cytosol	66.82	67.68
PGSC0003DMT400033802	Potato	cytosol	58.33	61.02
Solyc09g008620.1.1	Tomato	cytosol	56.45	59.34
AT2G36660.1	Thale cress	cytosol, plastid	50.63	52.87
GSMUA_Achr9P10860_001	Banana	cytosol	58.33	51.89
KRH61326	Soybean	cytosol, endoplasmic reticulum	44.5	44.92
TraesCS4B01G204800.1	Wheat	cytosol	45.91	44.85
TraesCS4A01G099500.1	Wheat	cytosol	45.6	44.48
KRH52023	Soybean	cytosol, endoplasmic reticulum	44.03	44.44
TraesCS4D01G205700.1	Wheat	cytosol	45.6	44.41
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.13	44.36
HORVU4Hr1G059070.1	Barley	cytosol	45.13	43.88
KRH70673	Soybean	nucleus	44.34	43.52
KRH50336	Soybean	cytosol	44.18	43.16
KRH15385	Soybean	nucleus	43.55	42.48
Bra034301.1-P	Field mustard	mitochondrion	7.39	42.34
KRH05656	Soybean	endoplasmic reticulum, nucleus	43.4	42.2
CDY72408	Canola	plastid	5.97	40.86
KRG91724	Soybean	cytosol	41.51	40.49
KXG40160	Sorghum	nucleus	45.13	39.81
Zm00001d047790_P001	Maize	plastid	44.65	38.64
KRH70233	Soybean	cytosol	38.05	38.47
KRH08608	Soybean	endoplasmic reticulum	40.25	38.44
CDY33264	Canola	mitochondrion, nucleus	11.48	36.5
CDY57754	Canola	nucleus	11.79	35.21
CDY30168	Canola	cytosol	27.67	32.71
CDY56198	Canola	cytosol	24.84	32.31
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.0	30.46
KRH27525	Soybean	nucleus	14.15	24.73
KRH36396	Soybean	endoplasmic reticulum	13.99	24.38
KRH02082	Soybean	nucleus	14.62	23.13
KRH10201	Soybean	mitochondrion, nucleus, plastid	10.69	23.13
KRH51075	Soybean	endoplasmic reticulum	14.31	22.92
KRH23136	Soybean	cytosol	15.09	22.91
KRH20867	Soybean	nucleus	14.47	22.49
KRH24702	Soybean	nucleus	14.15	22.44
KRH29709	Soybean	cytosol	14.15	22.44
KRH11417	Soybean	nucleus	14.31	22.14
KRH71168	Soybean	nucleus	14.62	21.58
KRH05723	Soybean	nucleus	13.99	21.55
KRH61258	Soybean	nucleus	13.84	21.52
KRH50251	Soybean	nucleus	14.31	21.11
KRH02581	Soybean	mitochondrion	13.68	21.07
KRH19347	Soybean	mitochondrion, nucleus	13.52	20.98
KRH15315	Soybean	nucleus	13.84	20.71
KRH51956	Soybean	nucleus	13.36	20.68
KRH47641	Soybean	nucleus	13.52	20.38
KRH06218	Soybean	nucleus	13.05	19.95
KRH52613	Soybean	nucleus	13.36	19.54
KRH61952	Soybean	mitochondrion	13.05	19.53

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100779547	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02012146	ncoils:Coil
EnsemblPlantsGene:GLYMA_19G188700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	UniProt:I1NAF8	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	EnsemblPlants:KRG96088	ProteinID:KRG96088	ProteinID:KRG96088.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000233F5E3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:44673977..44679033

Molecular Weight (calculated)

69600.5 Da

IEP (calculated)

9.517

GRAVY (calculated)

-0.466

Length

636 amino acids

Sequence
(BLAST)

001: MAVHPSVAAA PASLYVGDLH PDVSDSHLVD AFSEFKSLAS VRVCKDSSTG KSLCYGYLNF VSPQDAIRAI ELKNNSTLNG KAMRVMWSRR DPDARKSAIG
101: NLFVKNLPES IDNAGLQDIF KKYGNILSSK VVTSEDGKSK GYGFVQFESE ESSKVAIEKL NGYTVADKEL YVGKFVKKSD RILPGPDARY TNLYMKNLDL
201: DVSEATLQEK FSSFGKIVSL VIAKDNNGMS KGFGFVNYDN PDDAKKAMEA MNGSQLGSKI LYVARAQKKA EREQILHHQF EEKQKEQILK YKGSNIYVKN
301: IDDHVSDEEL RDHFSACGTI TSAKIMRDDK GISKGFGFVC FSTPEEANKA VNTFHGFMYH GKPLYVALAQ RKEDRKAQLQ LQYAQQLARL SGPSTAIIPS
401: GYPPYYYAAS GVISHVPPRA GLMYQHLALR PGWGANGFAP PARSFQQSPV PAVSNNTRQH RQNRGKLNGN SIAQGNTHSG TYLPQAQQIS QPVISSRDSS
501: TQQRTGQARY IPSGRQRDVE KGSGSSSVGS NSGRGGSQGS EMLHSLLAGA APEQQKEILG EHLYMLVHKL KPTLAAKITG MLLEMDNGEL LLLLESPESL
601: SAKVEEAVQV LKNSKTKVSG QDVLHSNFLS AEVAVN

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.