Factsheet for Solyc10g085750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021673	Potato	cytosol	96.46	95.54
KRH67800	Soybean	cytosol	67.68	66.61
KRG96088	Soybean	cytosol	68.01	66.51
VIT_08s0007g04380.t01	Wine grape	cytosol	67.2	65.93
KRH32613	Soybean	cytosol	48.87	62.17
Solyc09g008620.1.1	Tomato	cytosol	60.29	61.98
KRH19986	Soybean	cytosol	49.04	61.62
AT2G36660.1	Thale cress	cytosol, plastid	50.96	52.05
GSMUA_Achr9P10860_001	Banana	cytosol	57.56	50.07
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.95	45.13
CDY72408	Canola	plastid	6.59	44.09
TraesCS4D01G205700.1	Wheat	cytosol	45.66	43.49
TraesCS4B01G204800.1	Wheat	cytosol	45.5	43.47
TraesCS4A01G099500.1	Wheat	cytosol	45.5	43.4
HORVU4Hr1G059070.1	Barley	cytosol	45.5	43.27
Solyc12g088720.1.1	Tomato	plastid	45.5	42.49
Solyc01g107870.2.1	Tomato	extracellular	43.73	42.3
Bra034301.1-P	Field mustard	mitochondrion	7.4	41.44
KXG40160	Sorghum	nucleus	47.11	40.64
Zm00001d047790_P001	Maize	plastid	46.95	39.73
CDY57754	Canola	nucleus	12.86	37.56
CDY33264	Canola	mitochondrion, nucleus	11.74	36.5
CDY56198	Canola	cytosol	25.08	31.9
CDY30168	Canola	cytosol	27.49	31.78
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.56	30.46
Solyc03g118800.2.1	Tomato	nucleus	13.99	23.9
Solyc11g065880.1.1	Tomato	nucleus	15.59	23.26
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	14.15	21.95
Solyc07g042180.2.1	Tomato	nucleus	13.67	21.36
Solyc10g005260.2.1	Tomato	nucleus	13.83	20.92
Solyc03g031720.2.1	Tomato	nucleus	13.5	20.74
Solyc06g063000.2.1	Tomato	nucleus	13.83	20.62
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	13.67	20.58
Solyc03g122180.2.1	Tomato	nucleus	13.67	20.38
Solyc07g064510.2.1	Tomato	plastid	13.34	20.24
Solyc01g108500.2.1	Tomato	nucleus	13.34	20.1
Solyc10g050860.1.1	Tomato	nucleus	13.67	19.86
Solyc04g079310.2.1	Tomato	nucleus	14.31	19.73
Solyc06g062680.1.1	Tomato	cytosol	12.54	14.69

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:K4D409	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00517
SUPFAM:SSF54928	SUPFAM:SSF63570	EnsemblPlantsGene:Solyc10g085750.1	EnsemblPlants:Solyc10g085750.1.1	TIGRFAMs:TIGR01628	UniParc:UPI000276AA3A
SEG:seg	:	:	:	:	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:K4D409]

Coordinates

chr10:-:64826515..64831423

Molecular Weight (calculated)

68708.6 Da

IEP (calculated)

9.004

GRAVY (calculated)

-0.448

Length

622 amino acids

Sequence
(BLAST)

001: MAVPPTVLAT PSSLYVGDLH HDVSDGQLFD YFSDFKSLAS VRVCRDSSTG RSLCYGYVNF VSPQDAIRAI EVKNNSTLNG KIMRVSWSLR DPDARRSGKG
101: NVFIKNISDT IDNAKLQEMF QKFGNILSCK IVTHEDGKSK GYGFVQFGSE ESADAAIEKL NGIMAGEKQL YVGKFVKKTD RISPNPDAKY TNLYFKNLDV
201: DISEEHLREK FSGFGTIISL VIAKDENGAP KGFGFVNFDN PDDARKAAEA MNGSPVGSKT LYVARAQKKA EREQLLKRLF EERRREQIMK YQGSNVYVKN
301: IDDDVTEYEL HQLFSQCGTI TSAKVMQDEK GLSKGFGFVC FSTAEEAYNA VNTFYGFMLH RKPLYVAIAQ RKEERQAQLQ LQHAQRLAGL TGASAMYPGA
401: YPPLYYPGHG VVPQVPARPG LMYQSLAMRP GWGTNGFTNT PRPSYQPAPV PMIPNAYRPY RPNRGRMNGY MPASNVTNVQ PSGQPAVPSK DSQRAGQVRF
501: APNGQTRDVN NRSFGSIAES AADGTEMLST LLASANSDQQ KQILGERLYP LVHKHKPELA SKITGMLLEM DNAELLLLLE SPESLATKVD EAVDVLKLSK
601: AKVSSQESLQ PSFLSASEVA VN

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.