Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20363867
plastid: 22908117 unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039842 | Potato | cytosol | 89.49 | 99.33 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 81.98 | 85.31 |
| KRH15385 | Soybean | nucleus | 79.43 | 81.14 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 79.43 | 80.89 |
| Solyc01g107870.2.1 | Tomato | extracellular | 74.17 | 76.83 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 70.72 | 74.76 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 68.77 | 72.7 |
| Solyc10g085750.1.1 | Tomato | nucleus | 42.49 | 45.5 |
| Solyc09g008620.1.1 | Tomato | cytosol | 37.99 | 41.82 |
| CDX91689 | Canola | nucleus | 16.22 | 35.41 |
| Solyc03g118800.2.1 | Tomato | nucleus | 16.52 | 30.22 |
| Solyc11g065880.1.1 | Tomato | nucleus | 15.92 | 25.42 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 15.17 | 24.46 |
| Solyc12g009230.1.1 | Tomato | mitochondrion, nucleus | 14.71 | 24.44 |
| Solyc07g064510.2.1 | Tomato | plastid | 14.71 | 23.9 |
| Solyc07g042180.2.1 | Tomato | nucleus | 14.26 | 23.87 |
| Solyc06g062680.1.1 | Tomato | cytosol | 18.92 | 23.73 |
| Solyc10g005260.2.1 | Tomato | nucleus | 14.56 | 23.6 |
| Solyc06g063000.2.1 | Tomato | nucleus | 14.56 | 23.26 |
| Solyc03g031720.2.1 | Tomato | nucleus | 14.11 | 23.21 |
| Solyc04g079310.2.1 | Tomato | nucleus | 15.62 | 23.06 |
| Solyc10g050860.1.1 | Tomato | nucleus | 14.41 | 22.43 |
| Solyc03g122180.2.1 | Tomato | nucleus | 13.96 | 22.3 |
| Solyc01g108500.2.1 | Tomato | nucleus | 13.66 | 22.03 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | UniProt:K4DGU3 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom |
| InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 |
| PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | EnsemblPlantsGene:Solyc12g088720.1 | EnsemblPlants:Solyc12g088720.1.1 |
| TIGRFAMs:TIGR01628 | TMHMM:TMhelix | UniParc:UPI0002769457 | SEG:seg | : | : |
Description
Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:K4DGU3]
Coordinates
chr12:+:63977073..63980926
Molecular Weight (calculated)
72224.1 Da
IEP (calculated)
7.252
GRAVY (calculated)
-0.405
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQIQVQHQT PVAGGNGVAV AAAAAGAAAA VAAPGGGATS QFTSTSLYVG DLDFNITDSQ LYDLFNHVGQ VVSVRVCRDL STRRSLGYGY VNYSNPSDAA
101: RAMELLNFTP VNGKSIRVMY SHRDPTLRKS GSANIFIKNL DKSIDNKALH DTFSSFGNIL SCKIATDSNG QSKGYGFVQF DNEESAQGAI DKLNGMLMND
201: KQVYVGHFLR KQERESTTGM TKFNNVYVKN LAESATDDEL KNVFGEFGTI TSAVVMRDAD GKSKGFGFVN FENADDAAKA VEALNGKKFD EKEWYVGKAQ
301: KKSEREQELK NKFEQTAKEA VDKYQGVNLY VKNLDDTIDD EKLKELFAEF GTITSCKVMR DPSGISRGSG FVAFSTPEEA SRALSEMNGK MIVSKPLYVA
401: LAQRKEERRA KLQAQFSQLR PVAMPPSLAP RMPIYPPGAP GIGQQLFYGQ GPPALIPPQA GFGYQQQLVP GMRPGGAPMP NFFMPMVQQG QQGQRPGGRR
501: GAGPVQQSQQ PMPLMQQQMM PRGRMYRYPP GRNVPDGPMP GVAGGMLSVP YDMGGMLPRD AAAMGQPVPI STLATALANA PPEQQRTMLG ESLYPLVDQL
601: EHEHAAKVTG MLLEMDQTEV LHLLESPEAL KAKVSEAMDV LRNVQQATSS PADQLASLSL NDNLVS
101: RAMELLNFTP VNGKSIRVMY SHRDPTLRKS GSANIFIKNL DKSIDNKALH DTFSSFGNIL SCKIATDSNG QSKGYGFVQF DNEESAQGAI DKLNGMLMND
201: KQVYVGHFLR KQERESTTGM TKFNNVYVKN LAESATDDEL KNVFGEFGTI TSAVVMRDAD GKSKGFGFVN FENADDAAKA VEALNGKKFD EKEWYVGKAQ
301: KKSEREQELK NKFEQTAKEA VDKYQGVNLY VKNLDDTIDD EKLKELFAEF GTITSCKVMR DPSGISRGSG FVAFSTPEEA SRALSEMNGK MIVSKPLYVA
401: LAQRKEERRA KLQAQFSQLR PVAMPPSLAP RMPIYPPGAP GIGQQLFYGQ GPPALIPPQA GFGYQQQLVP GMRPGGAPMP NFFMPMVQQG QQGQRPGGRR
501: GAGPVQQSQQ PMPLMQQQMM PRGRMYRYPP GRNVPDGPMP GVAGGMLSVP YDMGGMLPRD AAAMGQPVPI STLATALANA PPEQQRTMLG ESLYPLVDQL
601: EHEHAAKVTG MLLEMDQTEV LHLLESPEAL KAKVSEAMDV LRNVQQATSS PADQLASLSL NDNLVS
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
Arabidopsis Description
PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.