Factsheet for PGSC0003DMT400039842

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088720.1.1	Tomato	plastid	99.33	89.49
VIT_18s0001g10170.t01	Wine grape	cytosol	85.67	80.31
KRH15385	Soybean	nucleus	82.5	75.92
KRH05656	Soybean	endoplasmic reticulum, nucleus	81.83	75.08
PGSC0003DMT400066245	Potato	extracellular	77.83	72.63
KRH52023	Soybean	cytosol, endoplasmic reticulum	73.67	70.16
KRH61326	Soybean	cytosol, endoplasmic reticulum	72.0	68.57
PGSC0003DMT400012508	Potato	nucleus	14.17	68.55
PGSC0003DMT400064531	Potato	cytosol	53.0	59.77
PGSC0003DMT400021673	Potato	cytosol	44.83	42.83
PGSC0003DMT400033802	Potato	cytosol	41.0	40.46
CDX91689	Canola	nucleus	18.0	35.41
PGSC0003DMT400014744	Potato	nucleus	16.0	26.37
PGSC0003DMT400023075	Potato	nucleus	15.83	26.17
PGSC0003DMT400018998	Potato	nucleus	16.67	23.92
PGSC0003DMT400020621	Potato	nucleus	15.33	23.23
PGSC0003DMT400066072	Potato	nucleus	14.33	20.98
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	14.0	20.95
PGSC0003DMT400057203	Potato	cytosol	14.0	20.84
PGSC0003DMT400042504	Potato	nucleus	14.33	20.82
PGSC0003DMT400013036	Potato	nucleus	13.83	20.75
PGSC0003DMT400029379	Potato	nucleus	13.67	20.5
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	14.17	20.38
PGSC0003DMT400058919	Potato	nucleus	13.67	19.66
PGSC0003DMT400066648	Potato	nucleus	13.67	19.52

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M1B8V3	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	EnsemblPlantsGene:PGSC0003DMG400015406	PGSC:PGSC0003DMG400015406
EnsemblPlants:PGSC0003DMT400039842	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000296787B	SEG:seg	:	:

Description

Polyadenylate-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015406]

Coordinates

chr12:+:56538678..56542908

Molecular Weight (calculated)

65865.9 Da

IEP (calculated)

8.355

GRAVY (calculated)

-0.481

Length

600 amino acids

Sequence
(BLAST)

001: MAQIQVVSVR VCRDLSTRRS LGYGYVNYSN PSDAARAMEL LNFTPVNGKS IRVMYSHRDP TLRKSGSANI FIKNLDKSID NKALHDTFSS FGNILSCKIA
101: TDSNGQSKGY GFVQYDNEES AQGAIDKLNG MLMNDKQVYV GHFLRKQERE STTGMIKFNN VYVKNLAESA TDDELKNVFG EFGSITSAVV MRDADGKSKG
201: FGFVNFEDAD DAAKAVEALN GKKFDEKEWY VGKAQKKSER EQELKNKFEQ TAKEAVDKYQ GVNLYVKNLD DTIDDEKLKE LFAEFGTITS CKVMRDPSGI
301: SRGSGFVAFS TPEEASRALS EMNGKMIVSK PLYVALAQRK EERRAKLQAQ FSQLRPVAMP PSLAPRMPIY PPGAPGIGQQ LFYGQGPPAL IPPQAGFGYQ
401: QQLVPGMRPG GAPMPNFFMP MVQQGQQGQR PGGRRGAGPV QQSQQPMPLM QQQMMPRGRM YRYPPGRNVP DGPMPGVAGG MLSVPYDMGG MLPRDAAMGQ
501: PVPISTLATA LANAPPEQQR TMLGESLYPL VDQLEHEHAA KVTGMLLEMD QTEVLHLLES PEALKAKVSE AMDVLRNVQQ ATSSPADQLA SLSLNDNLVS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.