Factsheet for PGSC0003DMT400013036

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031720.2.1	Tomato	nucleus	97.0	95.8
PGSC0003DMT400029379	Potato	nucleus	81.5	81.5
PGSC0003DMT400042504	Potato	nucleus	80.75	78.21
KRH51075	Soybean	endoplasmic reticulum	65.0	65.49
KRH02082	Soybean	nucleus	64.25	63.93
KRH20867	Soybean	nucleus	65.0	63.57
PGSC0003DMT400057203	Potato	cytosol	63.5	63.03
KRH11417	Soybean	nucleus	64.0	62.29
CDY34835	Canola	nucleus	59.5	60.56
Bra031774.1-P	Field mustard	nucleus	58.0	58.88
AT1G11650.2	Thale cress	nucleus	59.5	58.77
TraesCS7A01G295700.3	Wheat	plastid	44.5	57.23
Os04t0625800-01	Rice	nucleus	59.75	56.24
TraesCS6D01G081700.2	Wheat	plastid	57.0	55.61
TraesCS6A01G100800.1	Wheat	nucleus	56.75	55.37
Os08t0190200-00	Rice	nucleus	60.75	54.98
TraesCS6B01G128900.2	Wheat	plastid	57.25	54.92
TraesCS7B01G199000.1	Wheat	nucleus, plastid	57.25	54.39
TraesCS2D01G472700.1	Wheat	nucleus	59.0	54.13
KXG27152	Sorghum	nucleus	58.5	53.92
TraesCS2B01G495700.1	Wheat	nucleus	58.75	53.9
TraesCS2A01G473000.1	Wheat	nucleus	58.75	53.9
Zm00001d049416_P001	Maize	extracellular, nucleus	61.0	53.51
KXG24662	Sorghum	nucleus	61.0	53.51
Zm00001d026346_P002	Maize	extracellular	57.0	53.27
Zm00001d002244_P003	Maize	nucleus	59.0	52.68
PGSC0003DMT400020621	Potato	nucleus	49.75	50.25
PGSC0003DMT400066648	Potato	nucleus	51.75	49.29
PGSC0003DMT400018998	Potato	nucleus	50.0	47.85
HORVU2Hr1G106810.1	Barley	nucleus	55.25	47.84
HORVU7Hr1G066510.3	Barley	plastid	51.0	46.68
CDY34639	Canola	nucleus, plastid, vacuole	59.0	46.55
PGSC0003DMT400066072	Potato	nucleus	27.5	26.83
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	27.0	25.9
PGSC0003DMT400058919	Potato	nucleus	26.75	25.66
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	25.25	25.19
PGSC0003DMT400012508	Potato	nucleus	6.25	20.16
PGSC0003DMT400023075	Potato	nucleus	15.0	16.53
PGSC0003DMT400014744	Potato	nucleus	14.75	16.21
PGSC0003DMT400066245	Potato	extracellular	24.75	15.4
PGSC0003DMT400039842	Potato	cytosol	20.75	13.83
PGSC0003DMT400033802	Potato	cytosol	20.75	13.65
PGSC0003DMT400021673	Potato	cytosol	20.75	13.22
PGSC0003DMT400064531	Potato	cytosol	15.0	11.28
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.75	5.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400013036	EnsemblPlantsGene:PGSC0003DMG400005081	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF2	PFAM:PF00076	PFscan:PS50102	PGSC:PGSC0003DMG400005081	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002955652	UniProt:M1A272	MapMan:16.9.4	:

Description

Nuclear acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005081]

Coordinates

chr3:-:2574032..2580057

Molecular Weight (calculated)

44387.0 Da

IEP (calculated)

6.164

GRAVY (calculated)

-0.803

Length

400 amino acids

Sequence
(BLAST)

001: MAAPPQQQYQ QQPQQHWMAQ QQPAAYQVPQ QQSAYYYQQQ QQQQQQQQPQ YNAAAASAQP TSSDEIRSLW IGDLQFWMDE PYIQNCFAHT GEVASVKVIR
101: NKQSGQSEGY GFVEFISHAA AERNLQTYNG SMMPNSEQPF RLNWASLGSG EKRSDNGPEY TIFVGDLAAD VTDYMLQETF RASYSSVKGA KVVTDRVTGR
201: TKGYGFVKFA DESEQLHAMT EMNGKFCSTR PMRIGHAANK KSVPGQVQAS YQSTNGTQNE DDPSNTTIFV GNLDANVTDD HLRQVFGNYG QLLHVKIPVG
301: KRCGFVQFAD RSCAEEALRA LSGTQLGGQT IRLSWGRSPS NKQQPQADPN QYGGYYGYSA GYDAAAAAAY GYAQPAQDPN LYYGGYAGYG NYPPQQQQPQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.