Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031774.1-P | Field mustard | nucleus | 97.71 | 97.46 |
| AT1G11650.2 | Thale cress | nucleus | 87.53 | 84.94 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 97.2 | 75.35 |
| KRH20867 | Soybean | nucleus | 65.9 | 63.33 |
| KRH51075 | Soybean | endoplasmic reticulum | 63.87 | 63.22 |
| KRH02082 | Soybean | nucleus | 64.38 | 62.94 |
| KRH11417 | Soybean | nucleus | 65.65 | 62.77 |
| Solyc10g005260.2.1 | Tomato | nucleus | 63.1 | 60.34 |
| PGSC0003DMT400029379 | Potato | nucleus | 61.07 | 60.0 |
| Solyc03g031720.2.1 | Tomato | nucleus | 61.58 | 59.75 |
| PGSC0003DMT400013036 | Potato | nucleus | 60.56 | 59.5 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 61.32 | 58.35 |
| TraesCS7A01G295700.3 | Wheat | plastid | 46.06 | 58.2 |
| PGSC0003DMT400042504 | Potato | nucleus | 60.81 | 57.87 |
| CDX89287 | Canola | nucleus | 60.05 | 57.0 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 59.8 | 55.16 |
| CDY29263 | Canola | nucleus | 58.52 | 54.89 |
| CDY46671 | Canola | nucleus | 59.54 | 54.55 |
| CDY14290 | Canola | nucleus | 57.76 | 54.44 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 55.98 | 53.66 |
| Os04t0625800-01 | Rice | nucleus | 58.02 | 53.65 |
| CDY66423 | Canola | nucleus | 58.02 | 53.52 |
| TraesCS6B01G128900.2 | Wheat | plastid | 56.49 | 53.24 |
| KXG27152 | Sorghum | nucleus | 58.78 | 53.23 |
| TraesCS6D01G081700.2 | Wheat | plastid | 55.47 | 53.17 |
| Zm00001d026346_P002 | Maize | extracellular | 57.76 | 53.04 |
| Os08t0190200-00 | Rice | nucleus | 59.29 | 52.71 |
| KXG24662 | Sorghum | nucleus | 61.07 | 52.63 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 61.07 | 52.63 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 56.23 | 52.49 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 57.76 | 52.06 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 57.76 | 52.06 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 57.76 | 52.06 |
| CDY17286 | Canola | nucleus | 52.93 | 51.36 |
| Zm00001d002244_P003 | Maize | nucleus | 58.52 | 51.34 |
| CDY19874 | Canola | nucleus | 52.93 | 49.64 |
| CDY13992 | Canola | nucleus | 49.62 | 46.54 |
| CDX92537 | Canola | nucleus | 49.36 | 46.3 |
| CDY06734 | Canola | mitochondrion | 35.88 | 46.23 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 49.62 | 45.35 |
| CDY16528 | Canola | nucleus | 48.85 | 45.28 |
| CDY32840 | Canola | nucleus | 48.35 | 45.13 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 49.36 | 45.12 |
| HORVU7Hr1G066510.3 | Barley | plastid | 50.13 | 45.08 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 52.93 | 45.02 |
| CDY29341 | Canola | nucleus | 47.58 | 44.63 |
| CDY68866 | Canola | nucleus | 47.07 | 44.58 |
| CDY28101 | Canola | nucleus | 48.6 | 44.52 |
| CDY50959 | Canola | nucleus | 48.6 | 44.42 |
| CDX82310 | Canola | nucleus | 45.55 | 43.45 |
| CDY22988 | Canola | nucleus | 46.06 | 43.1 |
| CDX99265 | Canola | nucleus | 46.31 | 42.92 |
| CDX95176 | Canola | nucleus | 45.55 | 42.72 |
| CDY52067 | Canola | nucleus | 45.55 | 42.72 |
| CDX92304 | Canola | nucleus | 46.06 | 42.69 |
| CDX95462 | Canola | nucleus | 45.8 | 41.47 |
| CDY18570 | Canola | nucleus | 45.8 | 41.47 |
| CDY63384 | Canola | mitochondrion, nucleus | 27.99 | 26.32 |
| CDY02486 | Canola | nucleus | 27.23 | 25.48 |
| CDY51403 | Canola | nucleus | 27.23 | 25.48 |
| CDY33092 | Canola | nucleus | 27.48 | 25.41 |
| CDY61476 | Canola | nucleus | 26.97 | 25.3 |
| CDX81822 | Canola | mitochondrion, nucleus | 27.99 | 20.18 |
| CDY67365 | Canola | plastid | 14.76 | 19.86 |
| CDX69025 | Canola | nucleus, plastid | 25.45 | 16.37 |
| CDY72408 | Canola | plastid | 3.82 | 16.13 |
| CDY59539 | Canola | nucleus | 15.01 | 16.12 |
| CDX75397 | Canola | nucleus, plastid | 25.19 | 16.07 |
| CDY62723 | Canola | cytosol | 25.19 | 16.05 |
| CDY51957 | Canola | cytosol, plastid | 25.19 | 15.99 |
| CDY43894 | Canola | nucleus | 14.76 | 15.93 |
| CDY66740 | Canola | nucleus | 15.27 | 15.75 |
| CDY67617 | Canola | nucleus | 15.27 | 15.75 |
| CDX89562 | Canola | nucleus | 25.7 | 15.66 |
| CDY38939 | Canola | nucleus | 25.45 | 15.53 |
| CDX89664 | Canola | cytosol | 23.92 | 15.31 |
| CDX71223 | Canola | cytosol | 24.43 | 15.05 |
| CDY57754 | Canola | nucleus | 8.14 | 15.02 |
| CDY56198 | Canola | cytosol | 18.07 | 14.52 |
| CDY67921 | Canola | nucleus | 23.41 | 14.26 |
| CDX79296 | Canola | plastid | 6.62 | 14.21 |
| CDY46079 | Canola | nucleus | 22.65 | 14.15 |
| CDY51045 | Canola | cytosol | 23.41 | 14.09 |
| CDY54068 | Canola | cytosol | 23.16 | 13.94 |
| CDY36634 | Canola | nucleus | 22.9 | 13.87 |
| CDY41472 | Canola | cytosol, plastid | 21.63 | 13.26 |
| CDY03685 | Canola | nucleus | 21.12 | 12.91 |
| CDY37935 | Canola | nucleus | 21.37 | 12.9 |
| CDY30168 | Canola | cytosol | 17.56 | 12.83 |
| CDY36684 | Canola | plastid | 21.37 | 12.63 |
| CDX96344 | Canola | plastid | 21.88 | 12.57 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.61 | 12.5 |
| CDX72826 | Canola | plastid | 21.63 | 12.43 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.85 | 11.5 |
| CDY67364 | Canola | nucleus | 7.63 | 10.24 |
| CDX92325 | Canola | nucleus | 6.87 | 8.39 |
| CDY37229 | Canola | cytosol | 4.33 | 7.98 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 2.29 | 7.2 |
| CDX91689 | Canola | nucleus | 4.07 | 5.25 |
| CDY08990 | Canola | cytosol | 1.27 | 5.05 |
| CDX79295 | Canola | cytosol, plastid | 1.27 | 5.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078H8L0 | UniProt:A0A078H8L0 | EnsemblPlants:CDY34835 | ProteinID:CDY34835 |
| ProteinID:CDY34835.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00057394001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF1D80 |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g47610DBnaA09g47610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8L0]
Coordinates
chrLK032342:-:75060..78610
Molecular Weight (calculated)
43043.2 Da
IEP (calculated)
6.177
GRAVY (calculated)
-0.608
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHPPPGGLL PHHVPPPSAQ PHYGYQQPPP YAMPGAAPPQ MWNPQAAPPS QPMTADEIRT LWIGDLQFWM DENFLYGCFA HTGEVLSVKV IRNKQTSQVE
101: GYGFIEFVSH AAAERALQTY NNTPIPGLPD HLFRLNWASL GSGDKRDDSP DYTIFVGDLA ADVTDYVLLE TFRASYPSVK GAKVVIDRAT GRTKGYGFVR
201: FADESEQIRA MSEMNGVPCS SRPMRIGPAA SKKGESGQRD SYQSAASGVP TDNDPNNTTV FVGGLDPTIT DDHLKNVFSQ YGEIVHVKIP AGKRCGFVQF
301: SEKSCAEEAI RNLNGMQLGG TTVRLSWGRS PSSKQAADPS QYYYGGYGQG QEHYGYSMPQ DPNAYYGGYP GGYQQPPQVG QQPPQQQQVG FSY
101: GYGFIEFVSH AAAERALQTY NNTPIPGLPD HLFRLNWASL GSGDKRDDSP DYTIFVGDLA ADVTDYVLLE TFRASYPSVK GAKVVIDRAT GRTKGYGFVR
201: FADESEQIRA MSEMNGVPCS SRPMRIGPAA SKKGESGQRD SYQSAASGVP TDNDPNNTTV FVGGLDPTIT DDHLKNVFSQ YGEIVHVKIP AGKRCGFVQF
301: SEKSCAEEAI RNLNGMQLGG TTVRLSWGRS PSSKQAADPS QYYYGGYGQG QEHYGYSMPQ DPNAYYGGYP GGYQQPPQVG QQPPQQQQVG FSY
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.