Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010418.1-P | Field mustard | nucleus | 87.53 | 96.56 |
| CDY66423 | Canola | nucleus | 97.84 | 95.77 |
| CDX89287 | Canola | nucleus | 86.81 | 87.44 |
| CDY29263 | Canola | nucleus | 85.13 | 84.73 |
| AT4G27000.1 | Thale cress | nucleus | 84.17 | 84.58 |
| CDY46671 | Canola | nucleus | 85.61 | 83.22 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 84.65 | 82.86 |
| CDY17286 | Canola | nucleus | 68.82 | 70.86 |
| CDY19874 | Canola | nucleus | 68.59 | 68.26 |
| Solyc07g064510.2.1 | Tomato | plastid | 62.83 | 63.9 |
| PGSC0003DMT400057203 | Potato | cytosol | 61.63 | 63.77 |
| CDY34835 | Canola | nucleus | 54.44 | 57.76 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 64.03 | 57.67 |
| CDY06734 | Canola | mitochondrion | 35.01 | 47.87 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 55.4 | 45.56 |
| CDY29341 | Canola | nucleus | 45.56 | 45.35 |
| CDY68866 | Canola | nucleus | 45.08 | 45.3 |
| CDY22988 | Canola | nucleus | 45.56 | 45.24 |
| CDY28101 | Canola | nucleus | 46.52 | 45.22 |
| CDX82310 | Canola | nucleus | 44.6 | 45.15 |
| CDX92304 | Canola | nucleus | 45.8 | 45.05 |
| CDX99265 | Canola | nucleus | 45.8 | 45.05 |
| CDY32840 | Canola | nucleus | 45.32 | 44.89 |
| CDY50959 | Canola | nucleus | 46.28 | 44.88 |
| CDY52067 | Canola | nucleus | 44.84 | 44.63 |
| CDY16528 | Canola | nucleus | 45.32 | 44.58 |
| CDX95176 | Canola | nucleus | 44.12 | 43.91 |
| CDY13992 | Canola | nucleus | 44.12 | 43.91 |
| CDX95462 | Canola | nucleus | 45.56 | 43.78 |
| CDY18570 | Canola | nucleus | 45.56 | 43.78 |
| Zm00001d021149_P001 | Maize | cytosol | 17.27 | 43.64 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 44.84 | 43.49 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 44.84 | 43.49 |
| CDX92537 | Canola | nucleus | 43.41 | 43.2 |
| CDY63384 | Canola | mitochondrion, nucleus | 24.94 | 24.88 |
| CDY02486 | Canola | nucleus | 24.94 | 24.76 |
| CDY61476 | Canola | nucleus | 24.7 | 24.58 |
| CDY51403 | Canola | nucleus | 24.7 | 24.52 |
| CDY33092 | Canola | nucleus | 24.94 | 24.47 |
| CDY67365 | Canola | plastid | 13.43 | 19.18 |
| CDX81822 | Canola | mitochondrion, nucleus | 24.7 | 18.9 |
| CDY59539 | Canola | nucleus | 14.63 | 16.67 |
| CDY43894 | Canola | nucleus | 14.39 | 16.48 |
| CDX69025 | Canola | nucleus, plastid | 23.74 | 16.2 |
| CDY72408 | Canola | plastid | 3.6 | 16.13 |
| CDY67617 | Canola | nucleus | 14.63 | 16.01 |
| CDY66740 | Canola | nucleus | 14.63 | 16.01 |
| CDX75397 | Canola | nucleus, plastid | 23.5 | 15.91 |
| CDY38939 | Canola | nucleus | 24.22 | 15.68 |
| CDY62723 | Canola | cytosol | 23.02 | 15.56 |
| CDY51957 | Canola | cytosol, plastid | 23.02 | 15.51 |
| CDX89562 | Canola | nucleus | 23.98 | 15.5 |
| CDX89664 | Canola | cytosol | 22.54 | 15.31 |
| CDY46079 | Canola | nucleus | 22.78 | 15.1 |
| CDY54068 | Canola | cytosol | 23.26 | 14.85 |
| CDX79296 | Canola | plastid | 6.47 | 14.75 |
| CDY67921 | Canola | nucleus | 22.78 | 14.73 |
| CDY51045 | Canola | cytosol | 23.02 | 14.7 |
| CDY57754 | Canola | nucleus | 7.43 | 14.55 |
| CDY56198 | Canola | cytosol | 17.03 | 14.52 |
| CDX71223 | Canola | cytosol | 22.06 | 14.42 |
| CDY41472 | Canola | cytosol, plastid | 21.58 | 14.04 |
| CDY30168 | Canola | cytosol | 17.99 | 13.94 |
| CDY36634 | Canola | nucleus | 21.1 | 13.56 |
| CDY03685 | Canola | nucleus | 20.86 | 13.53 |
| CDY37935 | Canola | nucleus | 21.1 | 13.52 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.62 | 13.27 |
| CDY36684 | Canola | plastid | 21.1 | 13.23 |
| CDX72826 | Canola | plastid | 21.58 | 13.16 |
| CDX96344 | Canola | plastid | 21.58 | 13.16 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.76 | 12.0 |
| CDY37229 | Canola | cytosol | 5.04 | 9.86 |
| CDY67364 | Canola | nucleus | 6.71 | 9.56 |
| CDX91689 | Canola | nucleus | 5.04 | 6.89 |
| CDX92325 | Canola | nucleus | 5.04 | 6.52 |
| CDY08990 | Canola | cytosol | 0.96 | 4.04 |
| CDX79295 | Canola | cytosol, plastid | 0.96 | 4.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078FIM1 | UniProt:A0A078FIM1 | EnsemblPlants:CDY14290 | ProteinID:CDY14290 |
| ProteinID:CDY14290.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00078887001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEB0F1 |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g14210DBnaA08g14210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIM1]
Coordinates
chrLK032041:+:709332..712315
Molecular Weight (calculated)
45320.5 Da
IEP (calculated)
6.240
GRAVY (calculated)
-0.753
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQQPPPAAN GAAAAGPGDQ QAYHHHQQSW MMQPHQAQPP AGWNPQSAPS LGQPQQYSGG SQTPGSGDEI RSLWIGDLQP WMDESYLVNS FSITGEVQQA
101: KVIRNKQSGY SEGYGFIEFV SHAAAERILQ TYNGALMPSS EQTFKLNWAG ERRQSEGPEH TVFVGDLAPD VTDYMLTETF KNVYSSVKGA KVVVDRTTGR
201: SKGYGFVRFG DESEQIRAMT EMNGQYCSSR PMRTGPAANK KPLTMQQPGG YQNPQGNAGE SDLTNTTIFV GALDESVTED VLKSVFGQFG ELVHVKIPAG
301: KRCGFVQYAN RACAEQGLNA LNGTQLGGQS IRLSWGRTTS NKQTQPDQAQ YGGGGGYYGY PPQGYEGYGY APPPQDPNAY YGGYPGTGYG NYQQPGGGYQ
401: QQQQILKGHN ITYGHEI
101: KVIRNKQSGY SEGYGFIEFV SHAAAERILQ TYNGALMPSS EQTFKLNWAG ERRQSEGPEH TVFVGDLAPD VTDYMLTETF KNVYSSVKGA KVVVDRTTGR
201: SKGYGFVRFG DESEQIRAMT EMNGQYCSSR PMRTGPAANK KPLTMQQPGG YQNPQGNAGE SDLTNTTIFV GALDESVTED VLKSVFGQFG ELVHVKIPAG
301: KRCGFVQYAN RACAEQGLNA LNGTQLGGQS IRLSWGRTTS NKQTQPDQAQ YGGGGGYYGY PPQGYEGYGY APPPQDPNAY YGGYPGTGYG NYQQPGGGYQ
401: QQQQILKGHN ITYGHEI
001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
Arabidopsis Description
RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.