Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46079 | Canola | nucleus | 91.32 | 93.64 |
| CDX89562 | Canola | nucleus | 85.74 | 85.74 |
| CDY38939 | Canola | nucleus | 85.43 | 85.56 |
| AT2G23350.1 | Thale cress | nucleus | 82.17 | 80.06 |
| CDX79295 | Canola | cytosol, plastid | 10.08 | 65.0 |
| CDY08990 | Canola | cytosol | 9.77 | 63.64 |
| CDY62723 | Canola | cytosol | 59.07 | 61.75 |
| CDX89664 | Canola | cytosol | 58.6 | 61.56 |
| CDY51957 | Canola | cytosol, plastid | 59.07 | 61.55 |
| CDX75397 | Canola | nucleus, plastid | 58.6 | 61.36 |
| CDX69025 | Canola | nucleus, plastid | 57.98 | 61.21 |
| CDY67365 | Canola | plastid | 27.44 | 60.62 |
| CDX71223 | Canola | cytosol | 58.76 | 59.4 |
| CDY67364 | Canola | nucleus | 26.82 | 59.04 |
| CDY54068 | Canola | cytosol | 59.07 | 58.35 |
| CDY51045 | Canola | cytosol | 58.91 | 58.19 |
| CDY36634 | Canola | nucleus | 57.98 | 57.63 |
| CDX79296 | Canola | plastid | 15.66 | 55.19 |
| CDY37229 | Canola | cytosol | 17.05 | 51.64 |
| CDY72408 | Canola | plastid | 6.82 | 47.31 |
| CDY41472 | Canola | cytosol, plastid | 46.67 | 46.96 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 45.43 | 45.22 |
| CDX72826 | Canola | plastid | 47.91 | 45.18 |
| CDY37935 | Canola | nucleus | 45.58 | 45.16 |
| CDX96344 | Canola | plastid | 47.75 | 45.03 |
| CDY36684 | Canola | plastid | 46.36 | 44.96 |
| CDY03685 | Canola | nucleus | 43.88 | 44.01 |
| CDY33264 | Canola | mitochondrion, nucleus | 12.87 | 41.5 |
| CDX92325 | Canola | nucleus | 20.16 | 40.37 |
| CDY57754 | Canola | nucleus | 13.18 | 39.91 |
| CDY30168 | Canola | cytosol | 29.15 | 34.94 |
| CDX91689 | Canola | nucleus | 16.43 | 34.75 |
| CDY56198 | Canola | cytosol | 25.43 | 33.54 |
| CDY66740 | Canola | nucleus | 16.74 | 28.35 |
| CDY67617 | Canola | nucleus | 16.74 | 28.35 |
| CDY43894 | Canola | nucleus | 15.66 | 27.75 |
| CDY59539 | Canola | nucleus | 15.66 | 27.6 |
| CDY06734 | Canola | mitochondrion | 12.09 | 25.57 |
| CDX95176 | Canola | nucleus | 15.5 | 23.87 |
| CDY34835 | Canola | nucleus | 14.26 | 23.41 |
| CDY52067 | Canola | nucleus | 15.19 | 23.39 |
| CDX89287 | Canola | nucleus | 14.88 | 23.19 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 15.19 | 22.79 |
| CDY14290 | Canola | nucleus | 14.73 | 22.78 |
| CDY13992 | Canola | nucleus | 14.73 | 22.67 |
| CDY46671 | Canola | nucleus | 15.04 | 22.61 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 15.04 | 22.56 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 14.88 | 22.54 |
| CDY17286 | Canola | nucleus | 14.11 | 22.47 |
| CDX92537 | Canola | nucleus | 14.57 | 22.43 |
| CDY29263 | Canola | nucleus | 14.57 | 22.43 |
| CDY61476 | Canola | nucleus | 14.57 | 22.43 |
| CDY02486 | Canola | nucleus | 14.57 | 22.38 |
| CDY63384 | Canola | mitochondrion, nucleus | 14.42 | 22.25 |
| CDY66423 | Canola | nucleus | 14.57 | 22.07 |
| CDY51403 | Canola | nucleus | 14.26 | 21.9 |
| CDY33092 | Canola | nucleus | 14.42 | 21.88 |
| CDY19874 | Canola | nucleus | 14.11 | 21.72 |
| CDY22988 | Canola | nucleus | 13.33 | 20.48 |
| CDX82310 | Canola | nucleus | 12.87 | 20.15 |
| CDX99265 | Canola | nucleus | 13.18 | 20.05 |
| CDX95462 | Canola | nucleus | 13.33 | 19.82 |
| CDY29341 | Canola | nucleus | 12.87 | 19.81 |
| CDY68866 | Canola | nucleus | 12.71 | 19.76 |
| CDY18570 | Canola | nucleus | 13.18 | 19.59 |
| CDY16528 | Canola | nucleus | 12.87 | 19.58 |
| CDX92304 | Canola | nucleus | 12.87 | 19.58 |
| CDY32840 | Canola | nucleus | 12.71 | 19.48 |
| CDY50959 | Canola | nucleus | 12.87 | 19.3 |
| CDY28101 | Canola | nucleus | 12.71 | 19.11 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 14.57 | 18.54 |
| CDX81822 | Canola | mitochondrion, nucleus | 14.73 | 17.43 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078JQH4 | UniProt:A0A078JQH4 | EnsemblPlants:CDY67921 |
| ProteinID:CDY67921 | ProteinID:CDY67921.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00067678001 | InterPro:Hud_Sxl_RNA |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PRINTS:PR00961 | PFscan:PS50102 | PFscan:PS51309 |
| PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0004EDEA69 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g49200DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQH4]
Coordinates
chrLK036659:-:52..3178
Molecular Weight (calculated)
70134.2 Da
IEP (calculated)
6.594
GRAVY (calculated)
-0.453
Length
645 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQAPPPSSS PPATDGTTVA SDGLNLGSMC SLYIGDLDFS VTDSQLYDYF TKVCQVVSVR VCRDSATNTS LGYGYVNYSK IDDAEKAMKK LNFTHLNGKM
101: IRVTYSSRDS AARTSGIGNL FVKNLDKSVD NKTLHDTFSE CGNIVSCKVA TDHMGQSRGY GFVQFESEDS AKTATEKLNG RILNDKEIFV GPFLRKEERE
201: SASDKTKFTN VYVKNLSETT TDDELKAAFG QYGGISSAVV MRDGDGRSRC FGFVNFESAE DAARAVEGLN GKKFDDDKEW YVGKAQKKSE REVELSRRYE
301: QGVRETAGNG FDGLNLYVKN LDETVTDEKL RELFAEFGTI ISCKVMRDPN GISKGSGFVA LSAASEASRV LNEMNGKMVS GKPLYVALAQ RKEERRANLQ
401: AQFSQMRPAF VPGMSPSMPI FPGGGAPGIG QPMFYGQGPP LIIPHQGGFG YPPQMVPGMR PGFFGPMIQQ GPRPGGRRPG DGPMHHQPQQ PMPFMQSQMM
501: PRGRGYRYPP GRNMPDGLMP GGRVPFPYDS NGVPLGQHLP AGALASSLAS SLAQASPAQQ RTLLGESLYP LVDLIEHENA AKVTGMLLEM DQAEVLHLLE
601: FPEALNAKVS EALDVLRNVN QPTQVSEGKS GTPSDLLASL TIHDH
101: IRVTYSSRDS AARTSGIGNL FVKNLDKSVD NKTLHDTFSE CGNIVSCKVA TDHMGQSRGY GFVQFESEDS AKTATEKLNG RILNDKEIFV GPFLRKEERE
201: SASDKTKFTN VYVKNLSETT TDDELKAAFG QYGGISSAVV MRDGDGRSRC FGFVNFESAE DAARAVEGLN GKKFDDDKEW YVGKAQKKSE REVELSRRYE
301: QGVRETAGNG FDGLNLYVKN LDETVTDEKL RELFAEFGTI ISCKVMRDPN GISKGSGFVA LSAASEASRV LNEMNGKMVS GKPLYVALAQ RKEERRANLQ
401: AQFSQMRPAF VPGMSPSMPI FPGGGAPGIG QPMFYGQGPP LIIPHQGGFG YPPQMVPGMR PGFFGPMIQQ GPRPGGRRPG DGPMHHQPQQ PMPFMQSQMM
501: PRGRGYRYPP GRNMPDGLMP GGRVPFPYDS NGVPLGQHLP AGALASSLAS SLAQASPAQQ RTLLGESLYP LVDLIEHENA AKVTGMLLEM DQAEVLHLLE
601: FPEALNAKVS EALDVLRNVN QPTQVSEGKS GTPSDLLASL TIHDH
001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
Arabidopsis Description
PAB4Polyadenylate-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O22173]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.