CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79176
CDX91876
CDY07174
CDY08148
CDY48504
CDY67475

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22760.1	CDY08148	AT3G49580.1	21798944
AT1G22760.1	CDX79176	AT4G01090.1	21798944
AT1G22760.1	CDX91876	AT4G01090.1	21798944
AT1G22760.1	CDY07174	AT4G01090.1	21798944
AT1G22760.1	CDY48504	AT4G01090.1	21798944
AT1G22760.1	CDY67475	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016371.1-P	Field mustard	plastid	87.05	93.78
AT1G22760.1	Thale cress	nucleus, plastid	87.83	85.3
CDX91689	Canola	nucleus	38.85	81.64
CDX96344	Canola	plastid	73.17	68.57
CDX72826	Canola	plastid	72.7	68.13
CDY36684	Canola	plastid	68.95	66.47
CDY37935	Canola	nucleus	66.93	65.9
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	66.46	65.74
CDY03685	Canola	nucleus	63.49	63.3
CDY67365	Canola	plastid	25.9	56.85
PGSC0003DMT400064531	Potato	cytosol	43.84	52.82
VIT_18s0001g02490.t01	Wine grape	plastid	53.51	52.05
KRG91724	Soybean	cytosol	52.42	51.53
CDX79295	Canola	cytosol, plastid	7.96	51.0
CDX75397	Canola	nucleus, plastid	48.83	50.81
CDX69025	Canola	nucleus, plastid	48.36	50.74
CDY72408	Canola	plastid	7.33	50.54
CDX89664	Canola	cytosol	48.36	50.49
CDY08990	Canola	cytosol	7.64	49.49
CDY51957	Canola	cytosol, plastid	47.43	49.11
CDY62723	Canola	cytosol	47.27	49.11
CDX71223	Canola	cytosol	48.05	48.28
GSMUA_Achr5P24940_001	Banana	plastid	49.92	48.05
CDY54068	Canola	cytosol	48.83	47.93
CDY51045	Canola	cytosol	48.67	47.78
KRH08608	Soybean	endoplasmic reticulum	49.61	47.75
KRH70233	Soybean	cytosol	46.8	47.69
CDY46079	Canola	nucleus	46.65	47.54
CDX89562	Canola	nucleus	47.74	47.44
CDY36634	Canola	nucleus	47.89	47.3
CDY38939	Canola	nucleus	47.43	47.2
CDY67921	Canola	nucleus	46.96	46.67
CDY67364	Canola	nucleus	19.5	42.66
CDY57754	Canola	nucleus	13.42	40.38
CDY33264	Canola	mitochondrion, nucleus	12.32	39.5
CDX79296	Canola	plastid	10.45	36.61
CDY30168	Canola	cytosol	28.86	34.39
CDX92325	Canola	nucleus	17.0	33.85
CDY56198	Canola	cytosol	24.96	32.72
CDY37229	Canola	cytosol	10.45	31.46
CDY06734	Canola	mitochondrion	11.39	23.93
CDY43894	Canola	nucleus	13.57	23.9
CDY59539	Canola	nucleus	13.42	23.5
CDY66740	Canola	nucleus	13.88	23.36
CDY67617	Canola	nucleus	13.88	23.36
CDY13992	Canola	nucleus	14.82	22.67
CDX89287	Canola	nucleus	14.51	22.46
CDX92537	Canola	nucleus	14.66	22.43
CDY17286	Canola	nucleus	13.88	21.98
CDY46671	Canola	nucleus	14.66	21.91
CDX70874	Canola	cytosol, nucleus, peroxisome	14.66	21.86
CDY29263	Canola	nucleus	14.2	21.72
CDY34835	Canola	nucleus	13.26	21.63
CDX88893	Canola	cytosol, nucleus, peroxisome	14.51	21.63
CDX92786	Canola	mitochondrion, nucleus, peroxisome	14.35	21.6
CDY14290	Canola	nucleus	14.04	21.58
CDY19874	Canola	nucleus	13.88	21.24
CDY66423	Canola	nucleus	14.04	21.13
CDX95176	Canola	nucleus	13.57	20.76
CDY61476	Canola	nucleus	13.42	20.53
CDX99265	Canola	nucleus	13.57	20.52
CDY02486	Canola	nucleus	13.42	20.48
CDY52067	Canola	nucleus	13.26	20.29
CDY22988	Canola	nucleus	13.26	20.24
CDX82310	Canola	nucleus	12.95	20.15
CDY29341	Canola	nucleus	13.1	20.05
CDY16528	Canola	nucleus	13.26	20.05
CDX92304	Canola	nucleus	13.26	20.05
CDY18570	Canola	nucleus	13.57	20.05
CDY68866	Canola	nucleus	12.95	20.0
CDY32840	Canola	nucleus	13.1	19.95
CDX95462	Canola	nucleus	13.26	19.59
CDY50959	Canola	nucleus	13.1	19.53
CDY33092	Canola	nucleus	12.95	19.53
CDY51403	Canola	nucleus	12.79	19.52
CDY63384	Canola	mitochondrion, nucleus	12.64	19.38
CDY28101	Canola	nucleus	12.95	19.35
CDY34639	Canola	nucleus, plastid, vacuole	13.26	16.77
CDX81822	Canola	mitochondrion, nucleus	13.26	15.6

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:A0A078HUF0	UniProt:A0A078HUF0	EnsemblPlants:CDY41472
ProteinID:CDY41472	ProteinID:CDY41472.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0060211
EnsemblPlantsGene:GSBRNA2T00073079001	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0004EE4416
SEG:seg	:	:	:	:	:

Description

BnaA08g20740DPolyadenylate-binding protein 3 [Source:Projected from Arabidopsis thaliana (AT1G22760) UniProtKB/Swiss-Prot;Acc:O64380]

Coordinates

chrLK032498:-:168050..171575

Molecular Weight (calculated)

70914.7 Da

IEP (calculated)

8.764

GRAVY (calculated)

-0.458

Length

641 amino acids

Sequence
(BLAST)

001: MAAAVATGSD AAQTSVQVSV SVPVQSPVVA ADQTHPNSSL YVGDLDPRVA EAHLFDLFKH IASVVSVRVC RDQNRRSLGY AYINFSNPND AIRAMEALNY
101: TPLFDRPIRI MLSNRDPSTR KSGKGNIFIK SLDASIDNKA LFETFSSFGT ILSCKVATDV TGQSKGYGFV QFEKEESAQA AIDKLNGMLM NDKQVYVGHF
201: IRRQERSREE NAPTPRFTNV YVKNLPKEIG EDELRKTFGK FGSISSAVVM RDQSGNSRCF GFVNFECAEA AAQAVEKMNG ISLGDDVLFV GRAQKKSERE
301: QELRRKFEEE RMNRFEKSQG ANLYLKNLDD SVDDEKLKEM FSEFGNVTSS KVMVNPQGIS RGFGFVAYSN PEEASRALNE MNGKMIGRKP LYIALAQRKE
401: DRQAHLQALF SQIRAPESMQ SPMTGFNHPR GGPMHGPPQH MYPQFMPGMR PGSGPRNFIM PYPLQRQTQA GHRMGFGRGA TNMPHHIQQQ QQLIHHNPSP
501: GMRYMNGAGN GRNGLELSVS QGTLPPVTPL PIDASSIGIV APQNHQKAPL LPISKLTSLL ASASPADRTR MLGERLYPLV ERQEPLHVAK VTGMLLEMDQ
601: AEILHLMESP EALKSKVSEA LDVLRLSADA PDHDLGFSTI D

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.