Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003915.1-P | Field mustard | cytosol | 99.54 | 99.54 |
| CDY36684 | Canola | plastid | 96.3 | 93.83 |
| CDX72826 | Canola | plastid | 86.27 | 81.73 |
| CDX96344 | Canola | plastid | 86.27 | 81.73 |
| CDY37935 | Canola | nucleus | 77.31 | 76.96 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 79.01 | 75.07 |
| CDY03685 | Canola | nucleus | 72.84 | 73.41 |
| CDY41472 | Canola | cytosol, plastid | 65.74 | 66.46 |
| CDX91689 | Canola | nucleus | 26.23 | 55.74 |
| CDY67365 | Canola | plastid | 24.54 | 54.45 |
| CDX79295 | Canola | cytosol, plastid | 8.18 | 53.0 |
| CDY08990 | Canola | cytosol | 8.02 | 52.53 |
| PGSC0003DMT400064531 | Potato | cytosol | 42.28 | 51.5 |
| VIT_18s0001g02490.t01 | Wine grape | plastid | 51.7 | 50.83 |
| CDY51957 | Canola | cytosol, plastid | 47.84 | 50.08 |
| CDY62723 | Canola | cytosol | 47.53 | 49.92 |
| KRG91724 | Soybean | cytosol | 50.0 | 49.69 |
| CDX75397 | Canola | nucleus, plastid | 47.22 | 49.68 |
| CDX69025 | Canola | nucleus, plastid | 46.76 | 49.59 |
| CDX89664 | Canola | cytosol | 46.91 | 49.51 |
| CDY54068 | Canola | cytosol | 47.99 | 47.63 |
| CDY51045 | Canola | cytosol | 47.99 | 47.63 |
| KRH08608 | Soybean | endoplasmic reticulum | 48.92 | 47.6 |
| CDX71223 | Canola | cytosol | 46.76 | 47.49 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 48.77 | 47.45 |
| KRH70233 | Soybean | cytosol | 45.68 | 47.06 |
| CDY46079 | Canola | nucleus | 45.68 | 47.06 |
| CDX89562 | Canola | nucleus | 46.76 | 46.98 |
| CDY38939 | Canola | nucleus | 46.6 | 46.89 |
| CDY36634 | Canola | nucleus | 46.45 | 46.38 |
| CDY67921 | Canola | nucleus | 45.22 | 45.43 |
| CDY72408 | Canola | plastid | 6.33 | 44.09 |
| CDY67364 | Canola | nucleus | 19.6 | 43.34 |
| CDX79296 | Canola | plastid | 10.65 | 37.7 |
| CDY33264 | Canola | mitochondrion, nucleus | 11.42 | 37.0 |
| CDY57754 | Canola | nucleus | 12.04 | 36.62 |
| CDX92325 | Canola | nucleus | 16.98 | 34.16 |
| CDY30168 | Canola | cytosol | 27.16 | 32.71 |
| CDY37229 | Canola | cytosol | 10.65 | 32.39 |
| CDY56198 | Canola | cytosol | 24.23 | 32.11 |
| CDY43894 | Canola | nucleus | 14.51 | 25.82 |
| CDY59539 | Canola | nucleus | 14.51 | 25.68 |
| CDY67617 | Canola | nucleus | 14.97 | 25.46 |
| CDY66740 | Canola | nucleus | 14.97 | 25.46 |
| CDY06734 | Canola | mitochondrion | 11.27 | 23.93 |
| CDY13992 | Canola | nucleus | 14.04 | 21.72 |
| CDY17286 | Canola | nucleus | 13.43 | 21.48 |
| CDX89287 | Canola | nucleus | 13.58 | 21.26 |
| CDX92537 | Canola | nucleus | 13.73 | 21.24 |
| CDY29263 | Canola | nucleus | 13.58 | 21.0 |
| CDY46671 | Canola | nucleus | 13.89 | 20.98 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 13.73 | 20.89 |
| CDY19874 | Canola | nucleus | 13.43 | 20.76 |
| CDY14290 | Canola | nucleus | 13.27 | 20.62 |
| CDY34835 | Canola | nucleus | 12.5 | 20.61 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 13.58 | 20.47 |
| CDX95176 | Canola | nucleus | 13.12 | 20.29 |
| CDY61476 | Canola | nucleus | 13.12 | 20.29 |
| CDY02486 | Canola | nucleus | 13.12 | 20.24 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 13.43 | 20.23 |
| CDY66423 | Canola | nucleus | 13.27 | 20.19 |
| CDY33092 | Canola | nucleus | 13.12 | 20.0 |
| CDX99265 | Canola | nucleus | 12.96 | 19.81 |
| CDY52067 | Canola | nucleus | 12.81 | 19.81 |
| CDY51403 | Canola | nucleus | 12.81 | 19.76 |
| CDX82310 | Canola | nucleus | 12.5 | 19.66 |
| CDY63384 | Canola | mitochondrion, nucleus | 12.65 | 19.62 |
| CDY18570 | Canola | nucleus | 13.12 | 19.59 |
| CDY16528 | Canola | nucleus | 12.81 | 19.58 |
| CDY29341 | Canola | nucleus | 12.65 | 19.57 |
| CDY22988 | Canola | nucleus | 12.65 | 19.52 |
| CDY32840 | Canola | nucleus | 12.65 | 19.48 |
| CDX92304 | Canola | nucleus | 12.65 | 19.34 |
| CDX95462 | Canola | nucleus | 12.81 | 19.12 |
| CDY68866 | Canola | nucleus | 12.19 | 19.04 |
| CDY50959 | Canola | nucleus | 12.35 | 18.6 |
| CDY28101 | Canola | nucleus | 12.19 | 18.41 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 12.5 | 15.98 |
| CDX81822 | Canola | mitochondrion, nucleus | 13.12 | 15.6 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078BZF9 | EnsemblPlants:CDX68303 | ProteinID:CDX68303 |
| ProteinID:CDX68303.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00099592001 | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom |
| InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 |
| PANTHER:PTHR24012 | PANTHER:PTHR24012:SF620 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 |
| SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0004EDCEFD |
| SEG:seg | : | : | : | : | : |
Description
BnaA07g23430D
Coordinates
chrLK031787:+:4908441..4911416
Molecular Weight (calculated)
71320.2 Da
IEP (calculated)
8.600
GRAVY (calculated)
-0.456
Length
648 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDQVIPNQP AVTVASPPHA TQVAAVAAAA AEAFVTHPNS SLYVGDLDQT VNEAHLLDLF NQVAPVQTVR VCRDLTRRSL GYAYVNFANP DDAMRAMDIL
101: NYTPIKDRPI RIMRSNRDPS TRLSGKGNVF IKNLDLTIDN KALYDTFSSF GTILSCKVAM DSTGKSRGHG FVQYEKEETA QAAIDKLNGM LLNDKQVYVG
201: PFVRRQDRTR ESGAVPRFTN VYVKNLPKEI TDDELKKTFG KYGEISSAVV VKDESGNSRC FGFVNFESPE AAAVAVEKMN GISLGEDVLY VGRAQKKAER
301: GEELRRKYEQ ERLEKSYGTN LYVKNFDDGV NDEKLKEMFA EYGDVTSSKV MTNPEGLSRG FGFVAYSSPE EALKAMNEMN GKMIGRKPLY VSFAQRKEER
401: KTRLQTMFSM RPNAPLAGYP TGGPAAGPHH QMYMGQNGQG MVPSQPMGYG YQLQFMPGVR PGAGPANFMM PYPLQRPNQP GPRFGFRRGA PNMQQHFQQQ
501: PQMMQHNANS GMRYMGGPGN RMNVVEAAAP QGIMDASAIS HNASQNPQRP PLLPISKLTS ALALASPANH SQILGEQLYP LVEKQEPVHV AKVTGMLLEM
601: DQAEILHLLE SPEALKAKVS MALDVLRLSA NPSAVSSVDD QFAPSSTE
101: NYTPIKDRPI RIMRSNRDPS TRLSGKGNVF IKNLDLTIDN KALYDTFSSF GTILSCKVAM DSTGKSRGHG FVQYEKEETA QAAIDKLNGM LLNDKQVYVG
201: PFVRRQDRTR ESGAVPRFTN VYVKNLPKEI TDDELKKTFG KYGEISSAVV VKDESGNSRC FGFVNFESPE AAAVAVEKMN GISLGEDVLY VGRAQKKAER
301: GEELRRKYEQ ERLEKSYGTN LYVKNFDDGV NDEKLKEMFA EYGDVTSSKV MTNPEGLSRG FGFVAYSSPE EALKAMNEMN GKMIGRKPLY VSFAQRKEER
401: KTRLQTMFSM RPNAPLAGYP TGGPAAGPHH QMYMGQNGQG MVPSQPMGYG YQLQFMPGVR PGAGPANFMM PYPLQRPNQP GPRFGFRRGA PNMQQHFQQQ
501: PQMMQHNANS GMRYMGGPGN RMNVVEAAAP QGIMDASAIS HNASQNPQRP PLLPISKLTS ALALASPANH SQILGEQLYP LVEKQEPVHV AKVTGMLLEM
601: DQAEILHLLE SPEALKAKVS MALDVLRLSA NPSAVSSVDD QFAPSSTE
001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE
Arabidopsis Description
PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.