Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29341 | Canola | nucleus | 95.18 | 94.27 |
| CDY28101 | Canola | nucleus | 89.88 | 86.95 |
| CDY50959 | Canola | nucleus | 89.88 | 86.74 |
| CDY16528 | Canola | nucleus | 87.95 | 86.08 |
| CDY32840 | Canola | nucleus | 87.23 | 85.99 |
| CDY22988 | Canola | nucleus | 74.7 | 73.81 |
| AT1G49600.3 | Thale cress | nucleus | 80.0 | 73.78 |
| CDY18570 | Canola | nucleus | 76.63 | 73.27 |
| CDX95462 | Canola | nucleus | 76.39 | 73.04 |
| CDX82310 | Canola | nucleus | 72.29 | 72.82 |
| CDX92304 | Canola | nucleus | 73.25 | 71.7 |
| CDX99265 | Canola | nucleus | 73.25 | 71.7 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 62.65 | 62.8 |
| Solyc01g108500.2.1 | Tomato | nucleus | 62.17 | 62.47 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 46.02 | 61.22 |
| PGSC0003DMT400066648 | Potato | nucleus | 61.45 | 60.71 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 45.3 | 60.26 |
| KRH50251 | Soybean | nucleus | 61.45 | 59.16 |
| KRH71168 | Soybean | nucleus | 61.2 | 58.93 |
| Solyc10g050860.1.1 | Tomato | nucleus | 60.24 | 58.41 |
| GSMUA_Achr10P... | Banana | nucleus | 43.86 | 57.96 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 43.37 | 57.51 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 46.27 | 56.14 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 46.02 | 55.85 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 46.02 | 55.85 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 33.73 | 54.05 |
| CDY52067 | Canola | nucleus | 53.49 | 52.98 |
| CDX95176 | Canola | nucleus | 53.25 | 52.74 |
| CDY06734 | Canola | mitochondrion | 38.55 | 52.46 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 47.23 | 48.64 |
| Os04t0449900-01 | Rice | plastid | 45.06 | 48.32 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 49.16 | 48.11 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 43.86 | 48.02 |
| CDY34835 | Canola | nucleus | 44.58 | 47.07 |
| KXG35789 | Sorghum | nucleus | 49.64 | 47.03 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 16.63 | 46.94 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 48.92 | 46.88 |
| Zm00001d020748_P002 | Maize | plasma membrane | 48.67 | 46.65 |
| CDX89287 | Canola | nucleus | 46.02 | 46.14 |
| CDY14290 | Canola | nucleus | 45.3 | 45.08 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 45.3 | 45.08 |
| TraesCS2A01G317700.2 | Wheat | plastid | 46.02 | 45.05 |
| TraesCS2D01G315400.2 | Wheat | plastid | 46.02 | 45.05 |
| TraesCS2B01G335700.1 | Wheat | plastid | 45.54 | 45.0 |
| CDY29263 | Canola | nucleus | 45.3 | 44.87 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 45.06 | 44.84 |
| CDY17286 | Canola | nucleus | 43.61 | 44.69 |
| EES10898 | Sorghum | nucleus | 45.54 | 44.68 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 45.78 | 44.6 |
| CDY46671 | Canola | nucleus | 46.02 | 44.52 |
| CDY66423 | Canola | nucleus | 45.54 | 44.37 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 46.27 | 43.54 |
| CDY19874 | Canola | nucleus | 43.37 | 42.96 |
| EES05289 | Sorghum | plastid | 44.82 | 42.76 |
| Zm00001d050838_P001 | Maize | plastid | 43.86 | 42.33 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 43.13 | 41.92 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 45.06 | 41.01 |
| CDY13992 | Canola | nucleus | 40.72 | 40.33 |
| Zm00001d025551_P002 | Maize | plastid | 43.61 | 40.04 |
| CDX92537 | Canola | nucleus | 40.24 | 39.86 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 45.3 | 39.66 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 40.96 | 39.53 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 40.96 | 39.53 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 45.06 | 36.88 |
| CDY63384 | Canola | mitochondrion, nucleus | 25.78 | 25.6 |
| CDY51403 | Canola | nucleus | 25.3 | 25.0 |
| CDY61476 | Canola | nucleus | 25.06 | 24.82 |
| CDY02486 | Canola | nucleus | 25.06 | 24.76 |
| CDY33092 | Canola | nucleus | 25.3 | 24.71 |
| CDY67365 | Canola | plastid | 14.94 | 21.23 |
| CDX81822 | Canola | mitochondrion, nucleus | 25.78 | 19.63 |
| CDY72408 | Canola | plastid | 3.61 | 16.13 |
| CDY57754 | Canola | nucleus | 7.95 | 15.49 |
| CDX69025 | Canola | nucleus, plastid | 22.65 | 15.38 |
| CDY59539 | Canola | nucleus | 13.49 | 15.3 |
| CDX75397 | Canola | nucleus, plastid | 22.41 | 15.1 |
| CDY62723 | Canola | cytosol | 22.41 | 15.07 |
| CDY51957 | Canola | cytosol, plastid | 22.41 | 15.02 |
| CDY66740 | Canola | nucleus | 13.73 | 14.96 |
| CDY67617 | Canola | nucleus | 13.73 | 14.96 |
| CDY43894 | Canola | nucleus | 13.01 | 14.84 |
| CDY38939 | Canola | nucleus | 21.93 | 14.13 |
| CDX89562 | Canola | nucleus | 21.93 | 14.11 |
| CDX71223 | Canola | cytosol | 21.45 | 13.95 |
| CDX89664 | Canola | cytosol | 20.48 | 13.84 |
| CDY56198 | Canola | cytosol | 16.14 | 13.7 |
| CDX79296 | Canola | plastid | 6.02 | 13.66 |
| CDY51045 | Canola | cytosol | 20.96 | 13.32 |
| CDY54068 | Canola | cytosol | 20.96 | 13.32 |
| CDY46079 | Canola | nucleus | 20.0 | 13.2 |
| CDY41472 | Canola | cytosol, plastid | 20.0 | 12.95 |
| CDY30168 | Canola | cytosol | 16.63 | 12.83 |
| CDY36634 | Canola | nucleus | 20.0 | 12.79 |
| CDY67921 | Canola | nucleus | 19.76 | 12.71 |
| CDY03685 | Canola | nucleus | 19.52 | 12.6 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.02 | 12.5 |
| CDX72826 | Canola | plastid | 20.48 | 12.43 |
| CDX96344 | Canola | plastid | 20.48 | 12.43 |
| CDY37935 | Canola | nucleus | 19.28 | 12.29 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.04 | 12.19 |
| CDY36684 | Canola | plastid | 19.52 | 12.18 |
| CDX92325 | Canola | nucleus | 6.02 | 7.76 |
| CDY67364 | Canola | nucleus | 4.58 | 6.48 |
| CDX91689 | Canola | nucleus | 2.89 | 3.93 |
| CDY37229 | Canola | cytosol | 1.69 | 3.29 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078JTB1 | UniProt:A0A078JTB1 | EnsemblPlants:CDY68866 | ProteinID:CDY68866 |
| ProteinID:CDY68866.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00080462001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EAEAD5 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng60840DBnaCnng60840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTB1]
Coordinates
chrLK038155:-:2170..4757
Molecular Weight (calculated)
45248.5 Da
IEP (calculated)
6.797
GRAVY (calculated)
-0.635
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTANNGPDS SSVTPAGTTP PLQQPTPPPP QQQQWQQHQQ WMAAMAMMQQ QQMMMYPHQY AAYHHHHPQF QYAPPSYHQK NQQRGGDDVK TLWIGDLLHW
101: MDETYLHTFF SHTNQVSSVK VIRNKQTCQS EGYGFVEFLS RSAAEEVLQS YSGVTMPKAE QPFRLNWASF STGEKRASEN GPDLSIFVGD LAPDVTDAVL
201: LETFAAYQSV KGAKVVIDSN TGRSKGYGFV RFGDENERSK ALTEMNGAFC SSRQMRVGVA TPKRAAAYGQ QNGSQALTLA GGHGGNGSMA DGESNNATIF
301: VGGLDADVTE EDLMQPFSHF GEVVSVKIPV GKGCGFIQFG NRQSAEEAIG SLNGTVIGKN TVRLSWGRSP NKQWRSDSGN QWNGGYSRGQ GYNNGYGNQD
401: SNMYATSAAA VPGAS
101: MDETYLHTFF SHTNQVSSVK VIRNKQTCQS EGYGFVEFLS RSAAEEVLQS YSGVTMPKAE QPFRLNWASF STGEKRASEN GPDLSIFVGD LAPDVTDAVL
201: LETFAAYQSV KGAKVVIDSN TGRSKGYGFV RFGDENERSK ALTEMNGAFC SSRQMRVGVA TPKRAAAYGQ QNGSQALTLA GGHGGNGSMA DGESNNATIF
301: VGGLDADVTE EDLMQPFSHF GEVVSVKIPV GKGCGFIQFG NRQSAEEAIG SLNGTVIGKN TVRLSWGRSP NKQWRSDSGN QWNGGYSRGQ GYNNGYGNQD
401: SNMYATSAAA VPGAS
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
Arabidopsis Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.