Factsheet for Os09t0462700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G241400.1	Wheat	nucleus	72.34	93.27
TraesCS5D01G250100.1	Wheat	nucleus	72.11	92.98
TraesCS5A01G243500.1	Wheat	nucleus	72.11	92.98
GSMUA_Achr9P15210_001	Banana	nucleus	59.64	84.29
GSMUA_Achr3P06840_001	Banana	nucleus	57.37	81.09
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	77.32	78.75
Zm00001d020748_P002	Maize	plasma membrane	74.15	75.52
KXG35789	Sorghum	nucleus	74.83	75.34
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	70.98	73.82
Os02t0567900-01	Rice	cytosol, nucleus	42.18	71.81
Os04t0449900-01	Rice	plastid	56.92	64.86
PGSC0003DMT400020621	Potato	nucleus	56.24	62.63
Bra027446.1-P	Field mustard	cytosol	44.67	61.56
KRH05723	Soybean	nucleus	57.14	61.02
KRH61258	Soybean	nucleus	56.24	60.64
VIT_18s0001g11080.t01	Wine grape	nucleus	57.14	60.29
KRH15315	Soybean	nucleus	56.69	58.82
KRH51956	Soybean	nucleus	54.65	58.64
CDY06734	Canola	mitochondrion	38.78	56.07
Solyc04g079310.2.1	Tomato	nucleus	56.69	55.43
VIT_03s0063g00850.t01	Wine grape	nucleus	51.02	54.35
AT1G47500.1	Thale cress	nucleus	51.02	51.84
AT1G47490.1	Thale cress	nucleus	50.34	51.39
Solyc01g108500.2.1	Tomato	nucleus	48.07	51.33
Bra018813.1-P	Field mustard	mitochondrion, nucleus	45.35	51.28
KRH71168	Soybean	nucleus	49.89	51.04
KRH50251	Soybean	nucleus	49.89	51.04
PGSC0003DMT400066648	Potato	nucleus	47.85	50.24
Solyc10g050860.1.1	Tomato	nucleus	48.3	49.77
CDY52067	Canola	nucleus	47.17	49.64
CDX95176	Canola	nucleus	46.94	49.4
Os03t0569900-01	Rice	nucleus	43.54	47.76
CDY32840	Canola	nucleus	45.12	47.27
CDY16528	Canola	nucleus	45.35	47.17
CDY29341	Canola	nucleus	44.67	47.02
AT3G19130.1	Thale cress	nucleus	46.03	46.67
CDY28101	Canola	nucleus	45.35	46.62
Os03t0174100-02	Rice	nucleus	43.76	46.39
CDY50959	Canola	nucleus	45.12	46.28
CDY68866	Canola	nucleus	43.54	46.27
Os07t0516900-01	Rice	plastid	26.08	45.82
CDY22988	Canola	nucleus	43.31	45.48
CDX92304	Canola	nucleus	43.54	45.28
Bra001735.1-P	Field mustard	nucleus	42.18	45.15
CDX82310	Canola	nucleus	42.18	45.15
Bra022389.1-P	Field mustard	nucleus	43.54	45.07
CDX99265	Canola	nucleus	43.31	45.05
Os04t0625800-01	Rice	nucleus	42.86	44.47
Bra040663.1-P	Field mustard	nucleus	37.41	44.35
CDY18570	Canola	nucleus	42.86	43.55
Os08t0190200-00	Rice	nucleus	43.54	43.44
CDX95462	Canola	nucleus	42.63	43.32
AT1G49600.3	Thale cress	nucleus	42.86	42.0
Bra037538.1-P	Field mustard	nucleus	36.51	39.95
Bra014216.1-P	Field mustard	nucleus	39.46	30.42
Os07t0615400-01	Rice	nucleus	24.26	25.06
Os08t0520300-01	Rice	nucleus	22.9	22.6
Os11t0620100-01	Rice	nucleus	21.77	21.77
Os10t0457000-01	Rice	nucleus	14.06	17.46
Os09t0115400-01	Rice	nucleus	21.54	14.35
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	21.09	14.09
Os04t0504800-01	Rice	plasma membrane	20.86	13.96
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.05	12.98
Os04t0682400-01	Rice	nucleus	19.73	8.63
Os06t0589700-01	Rice	cytosol, extracellular	7.71	8.52

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	ProteinID:BAF25317.1	ProteinID:BAT08489.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os09g0462700
EnsemblPlants:Os09t0462700-01	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF5	UniProt:Q0J148
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0000DD976A	SEG:seg

Description

Similar to RNA Binding Protein 47. (Os09t0462700-01);Similar to H0818E04.14 protein. (Os09t0462700-02)

Coordinates

chr9:+:17498805..17503038

Molecular Weight (calculated)

46952.3 Da

IEP (calculated)

8.532

GRAVY (calculated)

-0.563

Length

441 amino acids

Sequence
(BLAST)

001: SSLLSPPNPL FLFTHRRCRR DSERAREREA EVSDDHAGGG GERRRRGRGA EAAAGGGGAA AAPGGAAAAA SLGGHAVRAP GGGGHGNAAP DGAGAAPVRP
101: ALRAVPRGGG QEENKTIWVG DLHYWMDENY LHSCFGYTGE VVAIKVIRNK QTGQSEGYGF VEFYSHAAAE KVLEGFAGHI MPNTDQPFRI NWASFSMGDR
201: RSDIASDHSI FVGDLASDVN DTTLLETFSK RYSSVKGAKV VIDANTGRSK GYGFVRFGDD NEKTHAMTEM NGVYCSTRPM RIGPATPRKT SGTSGPTGSA
301: ARSDGDLTNT TVFVGGLDPN VSEDDLRQTF SQYGEISSVK IPVGKQCGFV QFVQRKNAED ALQGLNGSTI GKQTVRLSWG RNPANKQLRS DNGSQWNNGM
401: YYAASPFYSG YGYPAPFPAD PGMYAAAYGA YPFYGNQQQV S

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.