Factsheet for Os06t0589700-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G076800.1	Wheat	mitochondrion	22.56	36.14
EER89984	Sorghum	plastid	51.13	32.33
TraesCS3B01G090800.1	Wheat	mitochondrion	48.87	31.2
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	43.61	31.18
Zm00001d046487_P001	Maize	cytosol	49.37	30.64
Os09t0115400-01	Rice	nucleus	45.11	27.19
TraesCS3D01G076700.1	Wheat	mitochondrion	29.57	26.52
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	43.36	26.21
Os04t0504800-01	Rice	plasma membrane	42.36	25.64
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.33	20.56
Os02t0567900-01	Rice	cytosol, nucleus	9.52	14.67
Os04t0449900-01	Rice	plastid	9.77	10.08
Os03t0174100-02	Rice	nucleus	10.28	9.86
Os03t0569900-01	Rice	nucleus	9.02	8.96
Os08t0520300-01	Rice	nucleus	9.27	8.28
Os11t0620100-01	Rice	nucleus	8.77	7.94
Os07t0615400-01	Rice	nucleus	8.27	7.73
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	8.52	7.71
Os04t0625800-01	Rice	nucleus	8.02	7.53
Os08t0190200-00	Rice	nucleus	8.27	7.47
Os10t0457000-01	Rice	nucleus	6.02	6.76
Os04t0682400-01	Rice	nucleus	8.27	3.27
Os07t0516900-01	Rice	plastid	0.75	1.2

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ProteinID:BAF19877.1	ProteinID:BAS98411.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os06g0589700
EnsemblPlants:Os06t0589700-01	InterPro:PABP-dom	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	UniProt:Q0DB96	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	UniParc:UPI0000E1288A	SEG:seg

Description

Similar to Poly(A)-binding protein (Fragment). (Os06t0589700-01)

Coordinates

chr6:-:23136424..23139448

Molecular Weight (calculated)

43825.7 Da

IEP (calculated)

9.553

GRAVY (calculated)

-0.450

Length

399 amino acids

Sequence
(BLAST)

001: MRDANGLSRC FGFVNFEKSE CARNAVKNLN GKSIGDMVLY VARAQKKSER QAELKAKFEH DKNQKFEKLQ TVNLYLKNLD DDINDEHLRK LFECFGEVAS
101: CKVMLDSHGR SKGCGFVSFA TVEDANNAIL KMNGKMVGKK PLYVAVAQRK EERKAFLAAH FARVRALATM APTLGPNIAP HQFNFGHGVP ALFPPPPPAG
201: FGFQPNFVPN MMMPYNMQRQ PGQRSGPPHG GMPRHLHNPH QMFHQNANQG FRHMPNRRNG VANPAMLHQH HRFSSPMQPM QQAVKHVVPV GELQAPSNNL
301: QTSLASANPE QQREILGDML FPLVEQLVNE KAYKVTGMLL ELDKTEVLNL VESPDTLRDK VAEAMKVLEL EATATAAAAA AASGSGDGDA AAPSSSSAA

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.