Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 40.68 | 91.16 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 69.89 | 87.64 |
| TraesCS3B01G090800.1 | Wheat | mitochondrion | 91.4 | 81.6 |
| EER89984 | Sorghum | plastid | 51.97 | 45.96 |
| Zm00001d046487_P001 | Maize | cytosol | 51.61 | 44.79 |
| Os06t0589700-01 | Rice | cytosol, extracellular | 31.18 | 43.61 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 44.27 | 37.94 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 44.27 | 37.31 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 43.55 | 36.54 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 34.59 | 29.6 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 15.05 | 22.83 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 13.8 | 22.51 |
| TraesCS7A01G295700.3 | Wheat | plastid | 12.37 | 22.19 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 14.87 | 19.95 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 13.26 | 19.53 |
| TraesCS2A01G221900.2 | Wheat | nucleus | 15.95 | 19.18 |
| TraesCS2A01G256500.1 | Wheat | nucleus | 12.01 | 18.82 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 14.34 | 18.69 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 14.87 | 18.53 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 13.08 | 17.8 |
| TraesCS2A01G317700.2 | Wheat | plastid | 13.44 | 17.69 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 13.8 | 17.66 |
| TraesCS7A01G252200.1 | Wheat | mitochondrion, nucleus | 13.98 | 17.45 |
Protein Annotations
| MapMan:17.4.2.5 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF620 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | EnsemblPlantsGene:TraesCS3A01G076800 | EnsemblPlants:TraesCS3A01G076800.1 |
| TIGR:cd12378 | TIGR:cd12379 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:+:47524317..47529832
Molecular Weight (calculated)
61108.0 Da
IEP (calculated)
9.132
GRAVY (calculated)
-0.272
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRPLLAPA VTLRPPGPAL GSWASLYVGD LDDGVAEGHL YALFCKVGPV ASLRICRDVT GRSLGYAYVI FYSREDAKHA LDSLNFTPAN GKHIRVMFSN
101: RDPTLRLSGK ANIFIKNLVP NIDGKSLSDM FGQYGTILSC KVATHFNGQS KGYGFVQFAD ETSANDAIDS LNGKLVNGKR IFVGLFIRRQ ERQPNISLSN
201: YTNVYVKNLP KEFTHNDLLQ EFGPFGTITS AVIMRDNDGI SKCFGFVNYG ESECAVEAVK ILNGKKIKDT ILYVGRAQKK SEREAELKEN FECARNEKFK
301: KFEGLNLYVK NLDDSINDLN LRGLFEVFGE IGSCKVMVDS QGRSKGYGFV SFTTIEAVHK AIDGMNRKIV GKKPLYVGVA QRKEERRAML VAHFARIQNT
401: GVLAPAVPQN FAPRQFYVGP GVPGMFPPQV RAGFGYQQFP QQHFSPWVPS GMTPYTYNMP RPLHHAWRGI QDEKLYPLGE QLEPELGGKV TGILGEAMEA
501: LQGRKLEEAR DTVDLATIPS SSTLSVSRDA IDPASTASSS SASADGANLA PSPSSSSA
101: RDPTLRLSGK ANIFIKNLVP NIDGKSLSDM FGQYGTILSC KVATHFNGQS KGYGFVQFAD ETSANDAIDS LNGKLVNGKR IFVGLFIRRQ ERQPNISLSN
201: YTNVYVKNLP KEFTHNDLLQ EFGPFGTITS AVIMRDNDGI SKCFGFVNYG ESECAVEAVK ILNGKKIKDT ILYVGRAQKK SEREAELKEN FECARNEKFK
301: KFEGLNLYVK NLDDSINDLN LRGLFEVFGE IGSCKVMVDS QGRSKGYGFV SFTTIEAVHK AIDGMNRKIV GKKPLYVGVA QRKEERRAML VAHFARIQNT
401: GVLAPAVPQN FAPRQFYVGP GVPGMFPPQV RAGFGYQQFP QQHFSPWVPS GMTPYTYNMP RPLHHAWRGI QDEKLYPLGE QLEPELGGKV TGILGEAMEA
501: LQGRKLEEAR DTVDLATIPS SSTLSVSRDA IDPASTASSS SASADGANLA PSPSSSSA
001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD
Arabidopsis Description
PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.