Factsheet for TraesCS7A01G288700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G229400.1
TraesCS4B01G087000.1
TraesCS4D01G084200.1
TraesCS5A01G115200.1
TraesCS5B01G121000.2
TraesCS5D01G126900.3
TraesCS7A01G265700.1
TraesCS7B01G166700.1
TraesCS7D01G269000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	TraesCS4A01G229400.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4B01G087000.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4D01G084200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5A01G115200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5B01G121000.2	AT2G43970.1	21798944
AT4G34110.1	TraesCS5D01G126900.3	AT2G43970.1	21798944
AT4G34110.1	TraesCS7A01G265700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7B01G166700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7D01G269000.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G287900.1	Wheat	cytosol	95.02	98.59
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	96.83	89.53
TraesCS7B01G182800.3	Wheat	cytosol	88.97	87.26
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	86.4	86.67
TraesCS5A01G161800.2	Wheat	nucleus	76.59	77.88
VIT_18s0001g10170.t01	Wine grape	cytosol	68.28	70.62
GSMUA_Achr4P20270_001	Banana	cytosol	67.98	69.98
KRH70673	Soybean	nucleus	67.07	68.52
KRH15385	Soybean	nucleus	67.37	68.4
KRH50336	Soybean	cytosol	67.22	68.36
KRH05656	Soybean	endoplasmic reticulum, nucleus	66.77	67.58
VIT_07s0031g00210.t01	Wine grape	cytosol	66.16	66.97
KRH52023	Soybean	cytosol, endoplasmic reticulum	63.44	66.67
KRH61326	Soybean	cytosol, endoplasmic reticulum	63.29	66.51
Bra013104.1-P	Field mustard	cytosol	61.63	66.23
CDX89664	Canola	cytosol	60.73	65.47
CDY67364	Canola	nucleus	28.85	65.19
Bra011488.1-P	Field mustard	cytosol, plastid	60.27	65.09
CDX69025	Canola	nucleus, plastid	59.97	64.98
CDX75397	Canola	nucleus, plastid	60.27	64.77
CDY67365	Canola	plastid	28.55	64.73
TraesCS2A01G359000.1	Wheat	cytosol	64.8	64.51
CDY54068	Canola	cytosol	63.14	64.01
CDY51957	Canola	cytosol, plastid	59.82	63.97
Bra034603.1-P	Field mustard	cytosol, plastid	59.82	63.97
Bra018797.1-P	Field mustard	cytosol	62.99	63.86
CDY51045	Canola	cytosol	62.99	63.86
CDY62723	Canola	cytosol	59.52	63.86
CDX71223	Canola	cytosol	61.48	63.79
AT4G34110.1	Thale cress	cytosol	60.57	63.75
AT1G49760.1	Thale cress	cytosol	64.05	63.19
Bra015220.1-P	Field mustard	cytosol	54.68	62.63
CDY36634	Canola	nucleus	60.42	61.63
CDX79296	Canola	plastid	16.31	59.02
PGSC0003DMT400012508	Potato	nucleus	11.03	58.87
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	66.16	55.65
GSMUA_Achr7P05430_001	Banana	nucleus	69.64	51.0
Bra022413.1-P	Field mustard	cytosol	31.27	46.41
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	37.31	44.27
CDX92325	Canola	nucleus	20.24	41.61
TraesCS4A01G099500.1	Wheat	cytosol	37.31	37.88
CDX91689	Canola	nucleus	14.95	32.46
TraesCS1A01G143500.1	Wheat	nucleus	16.16	29.08
TraesCS5A01G243500.1	Wheat	nucleus	14.8	28.66
TraesCS7A01G295700.3	Wheat	plastid	11.03	23.47
TraesCS6A01G204400.1	Wheat	mitochondrion	13.29	23.22
TraesCS4A01G014200.1	Wheat	nucleus	14.5	23.08
TraesCS2A01G473000.1	Wheat	nucleus	14.8	22.48
TraesCS6A01G100800.1	Wheat	nucleus	13.75	22.2
TraesCS2A01G169100.1	Wheat	nucleus	14.2	21.96
TraesCS2A01G256500.1	Wheat	nucleus	11.63	21.63
TraesCS2A01G221900.2	Wheat	nucleus	14.65	20.91
TraesCS2A01G317700.2	Wheat	plastid	13.29	20.75
TraesCS4A01G150000.1	Wheat	mitochondrion	13.44	19.87
Solyc06g062680.1.1	Tomato	cytosol	15.71	19.59
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	12.99	19.24

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
EnsemblPlantsGene:TraesCS7A01G288700	EnsemblPlants:TraesCS7A01G288700.1	TIGR:cd12378	TIGR:cd12379	TIGR:cd12380	TIGR:cd12381
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:348205634..348214412

Molecular Weight (calculated)

71437.0 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.382

Length

662 amino acids

Sequence
(BLAST)

001: MAAQVQASAA PAAGATEGGA SPAAGAAAAA APATAAAFPA TSLYVGDLDV SVQDAQLFDV FSQVGSVVSV RVCRDVNTRM SLGYAYVNFS SPADAARALE
101: MLNFTPVNGK PIRIMYSNRD PSSRKSGAAN IFIKNLDKSI DNKALYDTFS AFGNILSCKV ATEISGESKG YGFVQYEQDE SAQNAINELN GMLLNDKKVY
201: VGPFVRKQER ENVFGSPKFN NVYVKNLSES TTEDNLRELF GNFGPITSVI VVRADDGKSR CFGFVNFENP DDAARAVEDL NGKKFDDKEL YVGRAQKKSE
301: REMQLKENFE KSNKETADRN QGTNLYLKNL DSSVDDDEKL KELFAEFGTI TSCKVMRDLN GVNKGSGFVA FKSSEDASRA LVAMNGKMVG GKPLYVALAQ
401: RKEERRARLQ VQFSQMRPVM PPPVAPRMPM YPPGVPGMGQ QLFYGQPPPA FVNPQPGFGF QQHMIPGMRP GVAPMPNFVM PMVQQGQQPQ RPSGRRAGAG
501: GMQQPMPMGH QQMVPRGGRG GYRYASGRGM PDAAFRGVGA MGPSLYEMGR MTPGDTGAPQ QVSSGALASA LANSPPEQQR LMLGESLYPL VDQLEHDQAA
601: KVTGMLLEMD QTEVLHLIES PDALKSKVAE AMEVLRSAQQ QQTNVPADQL AALSLSDGFV AS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.