Factsheet for Bra022413.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92325	Canola	nucleus	69.73	96.58
Bra018797.1-P	Field mustard	cytosol	51.35	35.07
Bra011488.1-P	Field mustard	cytosol, plastid	46.64	33.93
Bra034603.1-P	Field mustard	cytosol, plastid	47.09	33.93
KRH70673	Soybean	nucleus	49.1	33.8
KRH50336	Soybean	cytosol	49.33	33.79
Bra013104.1-P	Field mustard	cytosol	46.64	33.77
Solyc01g107870.2.1	Tomato	extracellular	47.76	33.13
PGSC0003DMT400066245	Potato	extracellular	47.31	32.81
TraesCS7D01G287900.1	Wheat	cytosol	46.41	32.45
Bra034301.1-P	Field mustard	mitochondrion	8.07	32.43
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	43.95	32.08
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	46.41	31.36
TraesCS7A01G288700.1	Wheat	nucleus	46.41	31.27
Os09t0115400-01	Rice	nucleus	46.41	31.27
Bra015220.1-P	Field mustard	cytosol	39.69	30.62
TraesCS5D01G167000.1	Wheat	nucleus, unclear	44.62	30.57
TraesCS5B01G159400.1	Wheat	cytosol	44.62	30.57
TraesCS5A01G161800.2	Wheat	nucleus	44.62	30.57
GSMUA_Achr9P00990_001	Banana	cytosol	44.39	30.41
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	44.39	30.37
Os04t0504800-01	Rice	plasma membrane	44.84	30.35
GSMUA_Achr4P09890_001	Banana	cytosol	44.17	30.21
KXG35258	Sorghum	cytosol	44.39	30.18
Zm00001d005276_P007	Maize	cytosol	44.17	30.12
Zm00001d019824_P004	Maize	cytosol	44.17	30.03
Zm00001d025801_P005	Maize	cytosol, plastid	43.72	29.91
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	41.93	29.87
GSMUA_Achr4P20270_001	Banana	cytosol	43.05	29.86
GSMUA_AchrUn_...	Banana	cytosol	43.27	29.6
TraesCS2D01G358000.1	Wheat	cytosol	43.72	29.37
EES12460	Sorghum	plastid	43.72	29.37
Bra032172.1-P	Field mustard	cytosol	42.38	29.35
TraesCS2A01G359000.1	Wheat	cytosol	43.72	29.32
TraesCS2B01G378400.1	Wheat	nucleus	43.72	29.32
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	46.41	28.91
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	41.48	28.55
Bra016371.1-P	Field mustard	plastid	37.67	28.24
HORVU5Hr1G050560.1	Barley	plastid	44.39	28.21
TraesCS7B01G182800.3	Wheat	cytosol	42.6	28.15
Bra003915.1-P	Field mustard	cytosol	39.46	27.16
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	47.09	26.68
Bra007984.1-P	Field mustard	plastid	37.0	26.44
Bra016118.1-P	Field mustard	plastid	40.13	26.17
GSMUA_Achr7P05430_001	Banana	nucleus	45.07	22.23
Bra039841.1-P	Field mustard	cytosol	10.31	21.6
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	21.08	18.01
Bra027446.1-P	Field mustard	cytosol	12.33	17.19
Bra002230.1-P	Field mustard	nucleus	13.9	14.8
Bra006502.1-P	Field mustard	nucleus	13.68	14.19
Bra037962.1-P	Field mustard	nucleus	13.23	14.01
Bra031774.1-P	Field mustard	nucleus	12.33	13.96
Bra030908.1-P	Field mustard	nucleus	12.78	13.6
Bra018813.1-P	Field mustard	mitochondrion, nucleus	11.88	13.59
Bra030985.1-P	Field mustard	mitochondrion, nucleus	12.33	13.16
Bra001735.1-P	Field mustard	nucleus	11.21	12.14
Bra039603.1-P	Field mustard	nucleus	9.87	12.09
Bra019078.1-P	Field mustard	nucleus	10.99	11.89
Bra037217.1-P	Field mustard	nucleus	10.09	11.81
Bra022389.1-P	Field mustard	nucleus	10.99	11.5
Bra002947.1-P	Field mustard	nucleus	10.09	11.36
Bra026387.1-P	Field mustard	nucleus	9.19	10.43
Bra040663.1-P	Field mustard	nucleus	8.3	9.95
Bra010418.1-P	Field mustard	nucleus	8.3	9.79
Bra037538.1-P	Field mustard	nucleus	8.3	9.18
Bra014216.1-P	Field mustard	nucleus	8.74	6.82

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra022413	EnsemblPlants:Bra022413.1	EnsemblPlants:Bra022413.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	UniProt:M4E0W6	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	UniParc:UPI0002547E9D	SEG:seg	:	:	:

Description

AT1G49760 (E=5e-086) PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor

Coordinates

chrA05:-:17866243..17867929

Molecular Weight (calculated)

50089.2 Da

IEP (calculated)

9.414

GRAVY (calculated)

-0.414

Length

446 amino acids

Sequence
(BLAST)

001: MVDRLIAQRA LEMMNRTTIN GKEIRAIYHV HDPSLLRKGW VGCILIKNLE ESIGHKALYD TFRSFGSILR FKLATNNDTG RSQGFGFVQY ENEESALKAI
101: GYLNGMLLND EKIYVGPFLQ RGSPYDKGIF TDIYVKNFSK SLADEELEKI FGEFGPTTNC LIIRKGEVRQ GKSKGYGFVS FENPEDAEKA VEALNGKKFE
201: DKEWLVTKSK MTYKNGYNLK RGLKYYINIS QGLNYLCVKK LHKSVTDEIL KDYFSPYGTI ISCKVMQDSS GVSRGSGIVA FSKPEEASKA MEEINWKKKI
301: RKQVYVDLAM SLANATPEQQ RTMLGESLYP MVEQLEPESA AKITGMLLEM DQTKVLHLLE SFVALESKVA EATAILRTVK EQQQQQHRGG SESASGSKSS
401: LSPDSKPSLS TSFISPKPKS LARVNSRLSI GERSVVLLTN RFDSFE

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.