Factsheet for Bra030908.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02486	Canola	nucleus	99.76	99.52
CDY61476	Canola	nucleus	99.28	99.28
Bra037962.1-P	Field mustard	nucleus	96.66	96.2
AT1G54080.2	Thale cress	nucleus	89.5	87.21
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	78.04	78.42
Solyc06g063000.2.1	Tomato	nucleus	77.33	77.7
Bra030985.1-P	Field mustard	mitochondrion, nucleus	76.61	76.79
PGSC0003DMT400058919	Potato	nucleus	74.22	74.58
Solyc03g122180.2.1	Tomato	nucleus	73.99	74.34
GSMUA_Achr6P11660_001	Banana	mitochondrion	72.08	71.39
GSMUA_Achr10P...	Banana	mitochondrion	71.36	70.35
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	72.31	69.82
TraesCS4B01G148600.1	Wheat	nucleus	70.17	66.07
GSMUA_Achr11P...	Banana	nucleus	69.93	65.99
Os07t0615400-01	Rice	nucleus	66.83	65.57
Os11t0620100-01	Rice	nucleus	68.74	65.31
Zm00001d026528_P001	Maize	plastid	33.89	64.55
TraesCS4D01G150600.2	Wheat	nucleus	68.97	64.37
TraesCS2D01G176700.1	Wheat	nucleus	64.92	63.85
TraesCS4A01G150000.1	Wheat	mitochondrion	68.26	63.84
Zm00001d048824_P004	Maize	nucleus	68.02	63.76
TraesCS2B01G195400.1	Wheat	nucleus	65.16	63.64
EES08860	Sorghum	nucleus	66.83	63.49
TraesCS2A01G169100.1	Wheat	nucleus	64.68	63.32
HORVU4Hr1G033990.7	Barley	golgi, nucleus	65.39	62.41
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	71.6	60.48
HORVU2Hr1G031260.2	Barley	nucleus, plastid	64.68	54.53
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	18.62	53.42
Zm00001d026522_P001	Maize	nucleus	29.59	50.82
Bra002947.1-P	Field mustard	nucleus	25.3	26.77
Bra001735.1-P	Field mustard	nucleus	26.25	26.7
Bra031774.1-P	Field mustard	nucleus	24.82	26.4
Bra027446.1-P	Field mustard	cytosol	19.81	25.94
Bra018813.1-P	Field mustard	mitochondrion, nucleus	23.87	25.64
Bra019078.1-P	Field mustard	nucleus	25.06	25.49
Bra010418.1-P	Field mustard	nucleus	22.67	25.13
Bra022389.1-P	Field mustard	nucleus	25.54	25.12
Bra026387.1-P	Field mustard	nucleus	23.39	24.94
Bra040663.1-P	Field mustard	nucleus	21.48	24.19
Bra037538.1-P	Field mustard	nucleus	22.2	23.08
Bra002230.1-P	Field mustard	nucleus	22.43	22.43
Bra006502.1-P	Field mustard	nucleus	21.96	21.4
Bra034301.1-P	Field mustard	mitochondrion	5.25	19.82
Bra039603.1-P	Field mustard	nucleus	15.51	17.86
Bra037217.1-P	Field mustard	nucleus	15.99	17.59
Bra018797.1-P	Field mustard	cytosol	24.82	15.93
Bra014216.1-P	Field mustard	nucleus	21.72	15.91
Bra034603.1-P	Field mustard	cytosol, plastid	23.39	15.83
Bra011488.1-P	Field mustard	cytosol, plastid	23.15	15.82
Bra032172.1-P	Field mustard	cytosol	23.63	15.37
Bra013104.1-P	Field mustard	cytosol	22.2	15.1
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	22.43	15.02
Bra016371.1-P	Field mustard	plastid	20.29	14.29
Bra015220.1-P	Field mustard	cytosol	19.57	14.19
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	17.18	13.79
Bra003915.1-P	Field mustard	cytosol	20.05	12.96
Bra022413.1-P	Field mustard	cytosol	13.6	12.78
Bra007984.1-P	Field mustard	plastid	18.85	12.66
Bra016118.1-P	Field mustard	plastid	20.29	12.43
Bra039841.1-P	Field mustard	cytosol	2.39	4.69

Protein Annotations

EnsemblPlants:Bra030908.1	EnsemblPlants:Bra030908.1-P	EnsemblPlantsGene:Bra030908	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254561C	UniProt:M4EQ37	MapMan:16.9.3	:

Description

AT1G54080 (E=3e-188) UBP1A | oligouridylate-binding protein, putative

Coordinates

chrA08:+:699505..701931

Molecular Weight (calculated)

46441.8 Da

IEP (calculated)

7.242

GRAVY (calculated)

-0.513

Length

419 amino acids

Sequence
(BLAST)

001: MQNQRLKQQQ QQAMMQQAMM QQQHHSLYHP SLMAPPPPPQ MEPLPSGNLP PGFDPSTCRS VYAGNIHTQV TEVLLQEIFA STGPVESCKL IRKDKSSYGF
101: VHYFDRRSAG LAIMSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDAAL FESFSAFNTC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWI SSRQIRCNWA TKGATFGEDK HSSDGKSVVE LTNGSEDGRE ISISNEEAPE NNPQYTTVYV GNLAPEVTQL DLHRLFHTLG AGVIEEVRVQ
301: RDKGFGFVRY NTHDEAALAI QMGNSQPFLF SRPIKCSWGN KPTPTGTPSN PLPPPAPVPV PGLSPMDLLA YERQLALAKM HPQAQHSLRH VNAAGASAAM
401: YDGGFQNVAA AHQQLMYYQ

Best Arabidopsis Sequence Match ( AT1G54080.1 )
(BLAST)

001: MQNQRLIKQQ QQQQQQQHQQ AMIQQAMMQQ HPSLYHPGVM APPQMEPLPS GNLPPGFDPT TCRSVYAGNI HTQVTEILLQ EIFASTGPIE SCKLIRKDKS
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSDARVM WDQKTGRSRG FGFVSFRNQQ
201: DAQTAINEMN GKWVSSRQIR CNWATKGATF GEDKHSSDGK SVVELTNGSS EDGRELSNED APENNPQFTT VYVGNLSPEV TQLDLHRLFY TLGAGVIEEV
301: RVQRDKGFGF VRYNTHDEAA LAIQMGNAQP FLFSRQIRCS WGNKPTPSGT ASNPLPPPAP ASVPSLSAMD LLAYERQLAL AKMHPQAQHS LRQAGLGVNV
401: AGGTAAMYDG GYQNVAAAHQ QLMYYQ

Arabidopsis Description

UBP1AOligouridylate-binding protein 1A [Source:UniProtKB/TrEMBL;Acc:F4HV67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.