Factsheet for GSMUA_Achr6P11660_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P25720_001
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P03500_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr9P30650_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	GSMUA_Achr11P...	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr1P25720_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr7P03500_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr9P30650_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_AchrUn_...	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	90.31	89.88
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	87.94	85.71
KRH47641	Soybean	nucleus	82.27	82.46
KRH06218	Soybean	nucleus	80.85	82.21
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	81.32	81.9
GSMUA_Achr11P...	Banana	nucleus	85.82	81.76
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	80.38	81.53
Solyc06g063000.2.1	Tomato	nucleus	80.14	81.3
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	81.09	81.28
Solyc03g122180.2.1	Tomato	nucleus	76.83	77.94
PGSC0003DMT400058919	Potato	nucleus	76.83	77.94
AT1G17370.1	Thale cress	mitochondrion, nucleus	75.89	76.61
CDY63384	Canola	mitochondrion, nucleus	75.65	76.56
Bra030985.1-P	Field mustard	mitochondrion, nucleus	75.65	76.56
Solyc07g042180.2.1	Tomato	nucleus	71.16	75.63
PGSC0003DMT400066072	Potato	nucleus	73.05	75.37
KRH19347	Soybean	mitochondrion, nucleus	73.05	75.37
KRH02581	Soybean	mitochondrion	73.52	75.3
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	87.71	74.8
AT3G14100.1	Thale cress	nucleus	74.94	74.24
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	69.74	73.57
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	69.5	73.32
Zm00001d026528_P001	Maize	plastid	38.06	73.18
Os07t0615400-01	Rice	nucleus	73.52	72.83
Bra030908.1-P	Field mustard	nucleus	71.39	72.08
CDY02486	Canola	nucleus	71.39	71.9
Os11t0620100-01	Rice	nucleus	74.94	71.88
CDY61476	Canola	nucleus	70.92	71.6
Zm00001d048824_P004	Maize	nucleus	75.41	71.36
Bra037962.1-P	Field mustard	nucleus	70.92	71.26
CDY51403	Canola	nucleus	70.69	71.19
TraesCS4B01G148600.1	Wheat	nucleus	74.7	71.01
CDY33092	Canola	nucleus	70.92	70.59
GSMUA_Achr9P14120_001	Banana	nucleus	67.38	70.2
TraesCS4D01G150600.2	Wheat	nucleus	74.47	70.16
EES08860	Sorghum	nucleus	72.34	69.39
TraesCS4A01G150000.1	Wheat	mitochondrion	73.05	68.97
TraesCS2D01G176700.1	Wheat	nucleus	69.27	68.78
TraesCS2A01G169100.1	Wheat	nucleus	69.27	68.46
AT1G54080.2	Thale cress	nucleus	69.5	68.37
TraesCS2B01G195400.1	Wheat	nucleus	69.27	68.3
HORVU4Hr1G033990.7	Barley	golgi, nucleus	69.98	67.43
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	20.57	59.59
HORVU2Hr1G031260.2	Barley	nucleus, plastid	69.98	59.56
CDX81822	Canola	mitochondrion, nucleus	75.65	58.72
Zm00001d026522_P001	Maize	nucleus	32.39	56.15
GSMUA_Achr9P15210_001	Banana	nucleus	23.4	31.73
GSMUA_Achr3P06840_001	Banana	nucleus	23.17	31.41
GSMUA_Achr6P10190_001	Banana	nucleus	23.17	31.31
GSMUA_Achr10P...	Banana	nucleus	21.99	29.62
GSMUA_Achr6P29410_001	Banana	nucleus	22.46	28.96
GSMUA_Achr9P24980_001	Banana	cytosol	22.46	28.7
GSMUA_Achr8P31320_001	Banana	nucleus	24.82	26.25
GSMUA_Achr3P01720_001	Banana	mitochondrion	24.35	25.56
GSMUA_Achr10P...	Banana	nucleus	25.77	25.12
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	23.17	24.08
GSMUA_Achr6P09470_001	Banana	nucleus	7.57	21.77
GSMUA_Achr5P20140_001	Banana	nucleus	17.49	20.22
GSMUA_Achr4P00840_001	Banana	cytosol	20.33	17.77
GSMUA_Achr9P00990_001	Banana	cytosol	24.11	15.67
GSMUA_AchrUn_...	Banana	cytosol	23.64	15.34
GSMUA_Achr4P20270_001	Banana	cytosol	23.17	15.24
GSMUA_Achr4P09890_001	Banana	cytosol	23.17	15.03
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	20.09	13.12
GSMUA_Achr9P10860_001	Banana	cytosol	21.99	13.01
GSMUA_Achr5P24940_001	Banana	plastid	20.09	12.76
GSMUA_Achr7P05430_001	Banana	nucleus	22.7	10.62

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr6G11660_001	EnsemblPlants:GSMUA_Achr6P11660_001	EnsemblPlants:GSMUA_Achr6T11660_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0T664
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI000294A6C4
SEG:seg	:	:	:	:	:

Description

Putative Nucleolysin TIAR [Source:GMGC_GENE;Acc:GSMUA_Achr6G11660_001]

Coordinates

chr6:+:7713307..7723916

Molecular Weight (calculated)

46125.2 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.388

Length

423 amino acids

Sequence
(BLAST)

001: MQQLRLKQQQ ALMQQALLLQ QQQQQSLYPH PGLLAAPQIE PILSGNLPPG FDPSTCRSVY VGNVHLQVTE PLLQEVFQST GLVEGCKLIR KEKSSFGFVD
101: YYDRRSAALA IVTLNGRQLF GQPIKVNWAY ASGQREDTSG QYNIFVGDLS PEVTDATLFA CFSVYQSCSD ARVMWDQKTG RSRGFGFVSF RNQQDAQSAI
201: NDLNGKWLGS RQIRCNWATK GANSNEDKQN SDSKSVVELT NGSADDGQEN TNDDSPENNP QYTTVYVGNL AHEVTQVDLH RYFHALGAGV IEDVRIQHDK
301: GFGFVRYSDH SEAALAIQMG NGRIFCGKPI KCSWGSKPTP LGTASTPLPP PTAAPFPELS ATDLLGHDGS LVLSKMGGNQ ALMHAQGQVA LKQAALGMGA
401: GASQAIYDGG FQNVSAAQQF MYY

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.