Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63384 | Canola | mitochondrion, nucleus | 76.15 | 99.28 |
| Bra030985.1-P | Field mustard | mitochondrion, nucleus | 75.96 | 99.04 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 71.56 | 93.08 |
| VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 62.57 | 81.19 |
| KRH06218 | Soybean | nucleus | 61.83 | 81.01 |
| KRH47641 | Soybean | nucleus | 62.2 | 80.33 |
| CDY51403 | Canola | nucleus | 59.08 | 76.67 |
| CDY61476 | Canola | nucleus | 58.9 | 76.61 |
| CDY02486 | Canola | nucleus | 58.9 | 76.43 |
| CDY33092 | Canola | nucleus | 59.27 | 76.0 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 58.72 | 75.65 |
| GSMUA_Achr10P... | Banana | mitochondrion | 57.98 | 74.35 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 58.53 | 73.5 |
| GSMUA_Achr11P... | Banana | nucleus | 57.06 | 70.05 |
| Os11t0620100-01 | Rice | nucleus | 56.15 | 69.39 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 56.15 | 68.76 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 55.6 | 67.48 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 55.23 | 67.19 |
| Zm00001d048824_P004 | Maize | nucleus | 54.31 | 66.22 |
| Zm00001d026528_P001 | Maize | plastid | 26.61 | 65.91 |
| Os07t0615400-01 | Rice | nucleus | 51.56 | 65.81 |
| EES08860 | Sorghum | nucleus | 53.03 | 65.53 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 52.29 | 64.92 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 50.28 | 64.32 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 50.09 | 63.78 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 57.98 | 63.71 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 50.09 | 63.64 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 50.09 | 54.93 |
| Zm00001d026522_P001 | Maize | nucleus | 24.59 | 54.92 |
| CDY34835 | Canola | nucleus | 20.18 | 27.99 |
| CDX99265 | Canola | nucleus | 21.1 | 27.12 |
| CDX82310 | Canola | nucleus | 20.37 | 26.94 |
| CDY17286 | Canola | nucleus | 20.0 | 26.91 |
| CDX92304 | Canola | nucleus | 20.92 | 26.89 |
| CDY19874 | Canola | nucleus | 20.55 | 26.73 |
| CDY22988 | Canola | nucleus | 20.37 | 26.43 |
| CDX95462 | Canola | nucleus | 20.92 | 26.27 |
| CDY29263 | Canola | nucleus | 20.18 | 26.25 |
| CDY28101 | Canola | nucleus | 20.55 | 26.11 |
| CDX89287 | Canola | nucleus | 19.82 | 26.09 |
| CDY50959 | Canola | nucleus | 20.55 | 26.05 |
| CDY18570 | Canola | nucleus | 20.73 | 26.04 |
| CDY16528 | Canola | nucleus | 20.18 | 25.94 |
| CDY68866 | Canola | nucleus | 19.63 | 25.78 |
| CDY32840 | Canola | nucleus | 19.82 | 25.65 |
| CDY29341 | Canola | nucleus | 19.63 | 25.54 |
| CDY06734 | Canola | mitochondrion | 14.13 | 25.25 |
| CDY14290 | Canola | nucleus | 18.9 | 24.7 |
| CDY13992 | Canola | nucleus | 18.9 | 24.58 |
| CDY66423 | Canola | nucleus | 18.9 | 24.18 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 18.9 | 24.18 |
| CDX92537 | Canola | nucleus | 18.53 | 24.11 |
| CDY52067 | Canola | nucleus | 18.35 | 23.87 |
| CDX95176 | Canola | nucleus | 18.35 | 23.87 |
| CDY46671 | Canola | nucleus | 18.72 | 23.78 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 18.35 | 23.26 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 18.17 | 23.02 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 20.18 | 21.7 |
| CDY67365 | Canola | plastid | 10.46 | 19.52 |
| CDY66740 | Canola | nucleus | 12.84 | 18.37 |
| CDY67617 | Canola | nucleus | 12.66 | 18.11 |
| CDY59539 | Canola | nucleus | 12.11 | 18.03 |
| CDY43894 | Canola | nucleus | 11.93 | 17.86 |
| CDX69025 | Canola | nucleus, plastid | 18.35 | 16.37 |
| CDX75397 | Canola | nucleus, plastid | 18.35 | 16.23 |
| CDY72408 | Canola | plastid | 2.75 | 16.13 |
| CDY62723 | Canola | cytosol | 17.98 | 15.88 |
| CDY51957 | Canola | cytosol, plastid | 17.98 | 15.83 |
| CDY38939 | Canola | nucleus | 18.35 | 15.53 |
| CDX89562 | Canola | nucleus | 18.35 | 15.5 |
| CDY51045 | Canola | cytosol | 18.53 | 15.47 |
| CDY54068 | Canola | cytosol | 18.53 | 15.47 |
| CDY46079 | Canola | nucleus | 17.61 | 15.26 |
| CDY56198 | Canola | cytosol | 13.58 | 15.13 |
| CDY57754 | Canola | nucleus | 5.87 | 15.02 |
| CDX71223 | Canola | cytosol | 17.43 | 14.89 |
| CDX89664 | Canola | cytosol | 16.7 | 14.82 |
| CDY67921 | Canola | nucleus | 17.43 | 14.73 |
| CDY30168 | Canola | cytosol | 14.31 | 14.5 |
| CDY36634 | Canola | nucleus | 16.7 | 14.02 |
| CDY41472 | Canola | cytosol, plastid | 15.6 | 13.26 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.6 | 13.12 |
| CDY36684 | Canola | plastid | 15.78 | 12.93 |
| CDX72826 | Canola | plastid | 15.96 | 12.72 |
| CDX96344 | Canola | plastid | 15.96 | 12.72 |
| CDY03685 | Canola | nucleus | 14.86 | 12.6 |
| CDY37935 | Canola | nucleus | 15.05 | 12.6 |
| CDY33264 | Canola | mitochondrion, nucleus | 4.59 | 12.5 |
| CDX79296 | Canola | plastid | 4.04 | 12.02 |
| CDY67364 | Canola | nucleus | 5.5 | 10.24 |
| CDX92325 | Canola | nucleus | 5.69 | 9.63 |
| CDY37229 | Canola | cytosol | 2.57 | 6.57 |
| CDX91689 | Canola | nucleus | 3.49 | 6.23 |
| CDY08990 | Canola | cytosol | 1.1 | 6.06 |
| CDX79295 | Canola | cytosol, plastid | 1.1 | 6.0 |
Protein Annotations
| MapMan:15.5.17 | MapMan:16.9.3 | Gene3D:3.30.310.150 | Gene3D:3.30.70.330 | GO:A0A078CYB4 | EnsemblPlants:CDX81822 |
| ProteinID:CDX81822 | ProteinID:CDX81822.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00136766001 | InterPro:IPR000504 | InterPro:IPR003441 | InterPro:IPR012677 | InterPro:IPR036093 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF02365 | PFscan:PS50102 | PANTHER:PTHR44160 |
| PANTHER:PTHR44160:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF101941 | SUPFAM:SSF54928 |
| UniParc:UPI0004EDE672 | SEG:seg | : | : | : | : |
Description
BnaC08g37790D
Coordinates
chrLK031826:-:983984..988641
Molecular Weight (calculated)
60068.2 Da
IEP (calculated)
6.911
GRAVY (calculated)
-0.440
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRLKQQQQQ QAMMQQALMQ QQSLYHPGLL TAPQIEPIPS GNLPPGFDPT SCRSVYVGNV HIQVTEPLLQ EVFASTGPVE SCKLIRKEQS SYGFVHYFDR
101: RSAGLAILSL NGRHLFGQPI KVNWAYASGQ REDTSAHFNI FVGDLSPEVT DAMLFSCFSV YPSCSDARVM WDQKTGRSRG FGFVSFRNQQ DAQTAIDEAG
201: GKWLGTRQIR CNWATKGATS GEDKMSSDSK SVVELTSGVS EDGKDASNGD APENNAQYTT VYVGNLGPEV SQVDLHRHFY SLGAGVIEEV RIQRDKGFGF
301: VRYSTHVEAA LAIQLGNTHS YLGGRQMKCS WGSKPTPPGT ASNPLPPPGP APIPGFSASD LLAYERQLAM SKMAGMNPMM HHPQGQHALK QAAMGATGSN
401: QAIYDGGFQN AQQLMYYHVK DETPSGVWVS DGEVKLVKDK KHIVIGMKQS FTFCLKTNNT QTFWTMEEFQ REVDNEGLVL CKIFVKKPPP FKRTTTLKKT
501: HIATDTVMVD ASEEEILGPC VLNREASLPS SDDDDGVLYM LPRTQ
101: RSAGLAILSL NGRHLFGQPI KVNWAYASGQ REDTSAHFNI FVGDLSPEVT DAMLFSCFSV YPSCSDARVM WDQKTGRSRG FGFVSFRNQQ DAQTAIDEAG
201: GKWLGTRQIR CNWATKGATS GEDKMSSDSK SVVELTSGVS EDGKDASNGD APENNAQYTT VYVGNLGPEV SQVDLHRHFY SLGAGVIEEV RIQRDKGFGF
301: VRYSTHVEAA LAIQLGNTHS YLGGRQMKCS WGSKPTPPGT ASNPLPPPGP APIPGFSASD LLAYERQLAM SKMAGMNPMM HHPQGQHALK QAAMGATGSN
401: QAIYDGGFQN AQQLMYYHVK DETPSGVWVS DGEVKLVKDK KHIVIGMKQS FTFCLKTNNT QTFWTMEEFQ REVDNEGLVL CKIFVKKPPP FKRTTTLKKT
501: HIATDTVMVD ASEEEILGPC VLNREASLPS SDDDDGVLYM LPRTQ
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.