Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G49760.1 | CDY01209 | AT4G14270.1 | 21798944 |
| AT1G49760.1 | CDY01210 | AT4G14270.1 | 21798944 |
| AT1G49760.1 | CDY12749 | AT4G14270.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51045 | Canola | cytosol | 99.08 | 99.08 |
| AT1G49760.1 | Thale cress | cytosol | 92.34 | 89.87 |
| CDX79295 | Canola | cytosol, plastid | 12.25 | 80.0 |
| CDY08990 | Canola | cytosol | 11.79 | 77.78 |
| CDY67364 | Canola | nucleus | 34.3 | 76.45 |
| CDX89664 | Canola | cytosol | 71.06 | 75.57 |
| KRH70673 | Soybean | nucleus | 74.58 | 75.15 |
| KRH50336 | Soybean | cytosol | 74.58 | 74.81 |
| CDX71223 | Canola | cytosol | 72.89 | 74.61 |
| CDY62723 | Canola | cytosol | 70.14 | 74.23 |
| CDY51957 | Canola | cytosol, plastid | 70.29 | 74.15 |
| Solyc01g107870.2.1 | Tomato | extracellular | 72.59 | 73.72 |
| PGSC0003DMT400066245 | Potato | extracellular | 72.43 | 73.56 |
| CDX75397 | Canola | nucleus, plastid | 68.76 | 72.89 |
| CDX69025 | Canola | nucleus, plastid | 68.15 | 72.83 |
| CDY36634 | Canola | nucleus | 71.06 | 71.49 |
| CDY37229 | Canola | cytosol | 22.97 | 70.42 |
| CDY67365 | Canola | plastid | 31.09 | 69.52 |
| CDX79296 | Canola | plastid | 18.84 | 67.21 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 66.92 | 67.13 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 62.79 | 67.1 |
| Os09t0115400-01 | Rice | nucleus | 67.99 | 67.07 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 66.77 | 66.97 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 66.62 | 66.82 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 66.0 | 66.1 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 65.85 | 66.05 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 65.54 | 65.64 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 65.08 | 65.18 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.93 | 65.03 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 65.54 | 64.85 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 63.25 | 64.73 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 63.71 | 64.7 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 65.85 | 64.66 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 65.7 | 64.61 |
| EES12460 | Sorghum | plastid | 65.54 | 64.46 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 65.54 | 64.36 |
| Os04t0504800-01 | Rice | plasma membrane | 64.93 | 64.34 |
| KXG35258 | Sorghum | cytosol | 64.47 | 64.18 |
| Zm00001d005276_P007 | Maize | cytosol | 63.86 | 63.76 |
| Zm00001d019824_P004 | Maize | cytosol | 63.71 | 63.41 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 64.01 | 63.14 |
| HORVU5Hr1G050560.1 | Barley | plastid | 66.92 | 62.25 |
| CDX89562 | Canola | nucleus | 60.8 | 61.55 |
| CDY38939 | Canola | nucleus | 60.18 | 61.02 |
| CDY67921 | Canola | nucleus | 58.35 | 59.07 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 71.06 | 58.96 |
| CDY46079 | Canola | nucleus | 56.51 | 58.66 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 64.17 | 58.52 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 59.26 | 57.33 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 51.45 | 51.85 |
| CDX92325 | Canola | nucleus | 24.96 | 50.62 |
| CDY41472 | Canola | cytosol, plastid | 47.93 | 48.83 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.63 | 47.99 |
| CDY37935 | Canola | nucleus | 47.78 | 47.93 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 66.0 | 47.68 |
| CDX72826 | Canola | plastid | 49.77 | 47.51 |
| CDX96344 | Canola | plastid | 49.62 | 47.37 |
| CDY03685 | Canola | nucleus | 46.09 | 46.81 |
| CDY36684 | Canola | plastid | 47.47 | 46.62 |
| CDY72408 | Canola | plastid | 6.28 | 44.09 |
| CDY33264 | Canola | mitochondrion, nucleus | 11.94 | 39.0 |
| CDY57754 | Canola | nucleus | 12.71 | 38.97 |
| CDY30168 | Canola | cytosol | 29.1 | 35.32 |
| CDY56198 | Canola | cytosol | 26.34 | 35.17 |
| CDX91689 | Canola | nucleus | 16.23 | 34.75 |
| CDY59539 | Canola | nucleus | 15.47 | 27.6 |
| CDY66740 | Canola | nucleus | 15.93 | 27.3 |
| CDY67617 | Canola | nucleus | 15.93 | 27.3 |
| CDY43894 | Canola | nucleus | 15.16 | 27.2 |
| CDY61476 | Canola | nucleus | 16.08 | 25.06 |
| CDY06734 | Canola | mitochondrion | 11.64 | 24.92 |
| CDY02486 | Canola | nucleus | 15.93 | 24.76 |
| CDY51403 | Canola | nucleus | 15.62 | 24.29 |
| CDY33092 | Canola | nucleus | 15.77 | 24.24 |
| CDX89287 | Canola | nucleus | 15.31 | 24.15 |
| CDY13992 | Canola | nucleus | 15.47 | 24.11 |
| CDY17286 | Canola | nucleus | 14.85 | 23.95 |
| CDY29263 | Canola | nucleus | 15.31 | 23.87 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 15.62 | 23.72 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 15.62 | 23.72 |
| CDY63384 | Canola | mitochondrion, nucleus | 15.16 | 23.68 |
| CDX92537 | Canola | nucleus | 15.01 | 23.39 |
| CDY14290 | Canola | nucleus | 14.85 | 23.26 |
| CDY34835 | Canola | nucleus | 13.94 | 23.16 |
| CDX95176 | Canola | nucleus | 14.7 | 22.91 |
| CDY19874 | Canola | nucleus | 14.7 | 22.91 |
| CDY52067 | Canola | nucleus | 14.7 | 22.91 |
| CDY46671 | Canola | nucleus | 15.01 | 22.84 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 14.85 | 22.77 |
| CDX99265 | Canola | nucleus | 14.7 | 22.64 |
| CDY22988 | Canola | nucleus | 14.55 | 22.62 |
| CDX95462 | Canola | nucleus | 15.01 | 22.58 |
| CDY18570 | Canola | nucleus | 15.01 | 22.58 |
| CDX92304 | Canola | nucleus | 14.55 | 22.41 |
| CDY66423 | Canola | nucleus | 14.55 | 22.3 |
| CDX82310 | Canola | nucleus | 13.94 | 22.09 |
| CDY16528 | Canola | nucleus | 13.78 | 21.23 |
| CDY32840 | Canola | nucleus | 13.63 | 21.14 |
| CDY68866 | Canola | nucleus | 13.32 | 20.96 |
| CDY50959 | Canola | nucleus | 13.78 | 20.93 |
| CDY29341 | Canola | nucleus | 13.32 | 20.76 |
| CDY28101 | Canola | nucleus | 13.63 | 20.75 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 14.4 | 18.54 |
| CDX81822 | Canola | mitochondrion, nucleus | 15.47 | 18.53 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078IYF7 | UniProt:A0A078IYF7 | EnsemblPlants:CDY54068 |
| ProteinID:CDY54068 | ProteinID:CDY54068.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00012067001 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 |
| SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0004EC5A90 | SEG:seg |
Description
BnaCnng26160DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYF7]
Coordinates
chrLK033272:-:61333..65073
Molecular Weight (calculated)
70975.6 Da
IEP (calculated)
7.960
GRAVY (calculated)
-0.487
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQIQNANGG VAVSGAAAAA VGAAQQGTTS LYVGDLDQTV TDSQLFEAFS QAGQVVSVRV CRDMTTRRSL GYGYVNYATP QDATRALNEL NFMALNGRAI
101: RVMYSVRDPS VRKSGLGNIF IKNLDKSIDH KALHETFSAF GAILSCKVAV DPSGQSKGYG FVQYDTEEAA QRAIEQLNGM LLNDKQVYVG PFVHKQQRDP
201: SGEKVKFNNV YVKNLSESMS DEELKKVFGE FGVTTSCVIM RDGEGKSKGF GFVNFESSED AAKAVEALNG KTFDDKEWFV GRAQKKSERE NELKQKYEQS
301: LKEAADKSQG SNLYVKNLDE SVTDEKLREH FTPFGTITSC KVMRDPTGVS RGSGFVAFST PEEASRAIAE MNGKMIVSKP LYVALAQRKE DRKARLQAQF
401: SQMRPVPAVG PRMPMYPPGG PPMGQQLFYG QGPPGMIPPQ PGYGYQQQLV PGMRPGGAPM PNFFMPMMQQ GQQQQQQQRP GGGGRRGGAL PQPQQPSPMM
501: QPQQMHPRGR MYRYPQRDVN PMPGLTPNML SVPYDVSGGG AHLRDSPAAS QPVPIGALAT SLANAAPEHQ RTMLGENLYP LVEQLEPESA AKVTGMLLEM
601: DQTEVLHLLE SPDALKAKVA EAMDVLRSVA QQQQAGGAAD QLASLSLGDN IVP
101: RVMYSVRDPS VRKSGLGNIF IKNLDKSIDH KALHETFSAF GAILSCKVAV DPSGQSKGYG FVQYDTEEAA QRAIEQLNGM LLNDKQVYVG PFVHKQQRDP
201: SGEKVKFNNV YVKNLSESMS DEELKKVFGE FGVTTSCVIM RDGEGKSKGF GFVNFESSED AAKAVEALNG KTFDDKEWFV GRAQKKSERE NELKQKYEQS
301: LKEAADKSQG SNLYVKNLDE SVTDEKLREH FTPFGTITSC KVMRDPTGVS RGSGFVAFST PEEASRAIAE MNGKMIVSKP LYVALAQRKE DRKARLQAQF
401: SQMRPVPAVG PRMPMYPPGG PPMGQQLFYG QGPPGMIPPQ PGYGYQQQLV PGMRPGGAPM PNFFMPMMQQ GQQQQQQQRP GGGGRRGGAL PQPQQPSPMM
501: QPQQMHPRGR MYRYPQRDVN PMPGLTPNML SVPYDVSGGG AHLRDSPAAS QPVPIGALAT SLANAAPEHQ RTMLGENLYP LVEQLEPESA AKVTGMLLEM
601: DQTEVLHLLE SPDALKAKVA EAMDVLRSVA QQQQAGGAAD QLASLSLGDN IVP
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.