CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79791
CDY01209
CDY01210
CDY12749
CDY17896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	CDX79791	AT2G43970.1	21798944
AT4G34110.1	CDY17896	AT2G43970.1	21798944
AT4G34110.1	CDY01209	AT4G14270.1	21798944
AT4G34110.1	CDY01210	AT4G14270.1	21798944
AT4G34110.1	CDY12749	AT4G14270.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034603.1-P	Field mustard	cytosol, plastid	99.84	99.84
CDY62723	Canola	cytosol	98.87	99.19
CDX79295	Canola	cytosol, plastid	15.35	95.0
CDY08990	Canola	cytosol	14.86	92.93
CDX69025	Canola	nucleus, plastid	88.85	90.02
CDX75397	Canola	nucleus, plastid	88.85	89.29
AT4G34110.1	Thale cress	cytosol	89.18	87.76
CDX79296	Canola	plastid	24.72	83.61
CDX89664	Canola	cytosol	78.68	79.32
CDX71223	Canola	cytosol	81.74	79.31
CDY67364	Canola	nucleus	37.0	78.16
CDY36634	Canola	nucleus	79.97	76.27
CDY67365	Canola	plastid	35.86	76.03
KRH70673	Soybean	nucleus	74.47	71.14
KRH50336	Soybean	cytosol	74.64	70.97
CDY54068	Canola	cytosol	74.15	70.29
CDY51045	Canola	cytosol	73.99	70.14
PGSC0003DMT400066245	Potato	extracellular	72.7	69.98
Solyc01g107870.2.1	Tomato	extracellular	72.7	69.98
CDY37229	Canola	cytosol	23.75	69.01
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	64.78	65.63
GSMUA_Achr9P00990_001	Banana	cytosol	67.04	63.75
TraesCS2D01G358000.1	Wheat	cytosol	68.34	63.7
TraesCS2A01G359000.1	Wheat	cytosol	68.17	63.46
TraesCS2B01G378400.1	Wheat	nucleus	68.17	63.46
GSMUA_Achr4P09890_001	Banana	cytosol	66.4	63.04
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	66.4	63.04
GSMUA_AchrUn_...	Banana	cytosol	66.24	62.88
Zm00001d025801_P005	Maize	cytosol, plastid	65.59	62.27
Os04t0504800-01	Rice	plasma membrane	66.24	62.22
EES12460	Sorghum	plastid	66.72	62.2
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	65.91	61.82
Os09t0115400-01	Rice	nucleus	65.75	61.48
TraesCS5B01G159400.1	Wheat	cytosol	64.62	61.44
TraesCS5A01G161800.2	Wheat	nucleus	64.46	61.29
TraesCS5D01G167000.1	Wheat	nucleus, unclear	64.46	61.29
TraesCS7D01G287900.1	Wheat	cytosol	63.0	61.13
CDX89562	Canola	nucleus	63.65	61.09
KXG35258	Sorghum	cytosol	64.46	60.82
Zm00001d019824_P004	Maize	cytosol	64.46	60.82
CDY38939	Canola	nucleus	63.0	60.56
GSMUA_Achr4P20270_001	Banana	cytosol	62.84	60.5
Zm00001d005276_P007	Maize	cytosol	63.81	60.4
CDY46079	Canola	nucleus	61.07	60.1
TraesCS7A01G288700.1	Wheat	nucleus	63.97	59.82
CDY67921	Canola	nucleus	61.55	59.07
HORVU5Hr1G050560.1	Barley	plastid	64.62	56.98
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	71.57	56.29
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	64.14	55.45
TraesCS7B01G182800.3	Wheat	cytosol	59.45	54.52
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	53.31	50.93
CDY72408	Canola	plastid	7.59	50.54
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.08	47.84
CDY37935	Canola	nucleus	50.08	47.62
CDY41472	Canola	cytosol, plastid	49.11	47.43
CDY03685	Canola	nucleus	48.95	47.12
CDX72826	Canola	plastid	51.86	46.93
CDX96344	Canola	plastid	51.86	46.93
CDY36684	Canola	plastid	50.24	46.77
GSMUA_Achr7P05430_001	Banana	nucleus	65.59	44.91
CDX92325	Canola	nucleus	22.94	44.1
CDY57754	Canola	nucleus	14.05	40.85
CDY33264	Canola	mitochondrion, nucleus	13.09	40.5
CDY30168	Canola	cytosol	30.69	35.32
CDY56198	Canola	cytosol	26.98	34.15
CDX91689	Canola	nucleus	16.64	33.77
CDY59539	Canola	nucleus	16.48	27.87
CDY66740	Canola	nucleus	16.96	27.56
CDY67617	Canola	nucleus	16.96	27.56
CDY43894	Canola	nucleus	16.16	27.47
CDY06734	Canola	mitochondrion	13.25	26.89
CDY13992	Canola	nucleus	17.61	26.01
CDX92537	Canola	nucleus	17.45	25.78
CDY34835	Canola	nucleus	15.99	25.19
CDX70874	Canola	cytosol, nucleus, peroxisome	17.29	24.88
CDX88893	Canola	cytosol, nucleus, peroxisome	17.29	24.88
CDY17286	Canola	nucleus	15.99	24.44
CDX89287	Canola	nucleus	15.99	23.91
CDY19874	Canola	nucleus	15.99	23.63
CDY29263	Canola	nucleus	15.83	23.39
CDY61476	Canola	nucleus	15.83	23.39
CDY02486	Canola	nucleus	15.83	23.33
CDX92786	Canola	mitochondrion, nucleus, peroxisome	15.99	23.24
CDX95176	Canola	nucleus	15.67	23.15
CDY46671	Canola	nucleus	15.99	23.08
CDY14290	Canola	nucleus	15.51	23.02
CDY63384	Canola	mitochondrion, nucleus	15.51	22.97
CDY51403	Canola	nucleus	15.51	22.86
CDY33092	Canola	nucleus	15.67	22.82
CDY52067	Canola	nucleus	15.35	22.67
CDY68866	Canola	nucleus	15.02	22.41
CDY66423	Canola	nucleus	15.19	22.07
CDY29341	Canola	nucleus	14.86	21.96
CDY16528	Canola	nucleus	15.02	21.93
CDY32840	Canola	nucleus	14.86	21.85
CDY22988	Canola	nucleus	14.7	21.67
CDY50959	Canola	nucleus	15.02	21.63
CDY28101	Canola	nucleus	14.86	21.45
CDX95462	Canola	nucleus	15.02	21.43
CDY18570	Canola	nucleus	15.02	21.43
CDX82310	Canola	nucleus	14.22	21.36
CDX99265	Canola	nucleus	14.54	21.23
CDX92304	Canola	nucleus	14.38	20.99
CDY34639	Canola	nucleus, plastid, vacuole	16.16	19.72
CDX81822	Canola	mitochondrion, nucleus	15.83	17.98

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:A0A078IPX9	UniProt:A0A078IPX9	EnsemblPlants:CDY51957
ProteinID:CDY51957	ProteinID:CDY51957.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	EnsemblPlantsGene:GSBRNA2T00004546001
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0004EEB670	SEG:seg

Description

BnaA08g11610DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPX9]

Coordinates

chrLK033041:+:78960..82229

Molecular Weight (calculated)

67622.5 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.499

Length

619 amino acids

Sequence
(BLAST)

001: MAQVQTANGS SAAAQAPAQI GTTSLYVGDL DLNVTDSQLF EAFSQMGQVV SVRVCRDLAT RKSLGYGYVN FANPQDAARA IQEMNFMPLY GKPIRVMYSH
101: RDPSVRRSGA GNIFIKNLDL AIDHKALHDT FSTFGNIVSC KVAVDASGQS KGYGFVQYAV EESAQKAIEK LNGMLLNDKQ VYVGPFLRRQ ERDSSANKTK
201: FTNVYVKNLG ESTTDDDLKK AFSEYGKITS AVVMKDGEGK SKGFGFVNFE NADDAARAVE ALNGHKFDDK EWYVGRAQKK SERETELRVR YEQNLKEAAE
301: KFQSSNLYVK NLDPSISDEK LKEIFSPFGT VTSCKVMRDP SGISKGSGFV AFSTPEEATE AMSQLSGKMV ESKPLYVAIA QKKEDRRVRL QAQFSQPRPV
401: AMPPTAGPRM PMFPPGGPGI GQQMFYGQAP PTMIPPQPGY GYQQQLVPGM RPGGGHGPNY FMPMVQPHQQ RPGGGGRRPG GIQQFQQQPP MMQHQMHPRG
501: RNIRYSQGRG VSGGDVPPYD MGNNNMPLPI GTLASNLANA SPEQQRTMLG ENLYPLVEKL EAESAAKVTG MLLEMDQTEV LHLLESPEAL EAKVAEAMDV
601: LRSVAAGGAA EQLASLNLS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.