Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89287 | Canola | nucleus | 92.6 | 93.72 |
| Bra026387.1-P | Field mustard | nucleus | 81.15 | 86.51 |
| CDY14290 | Canola | nucleus | 84.73 | 85.13 |
| CDY46671 | Canola | nucleus | 86.87 | 84.85 |
| AT4G27000.1 | Thale cress | nucleus | 83.53 | 84.34 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 85.68 | 84.27 |
| CDY66423 | Canola | nucleus | 84.01 | 82.63 |
| CDY17286 | Canola | nucleus | 70.17 | 72.59 |
| CDY19874 | Canola | nucleus | 70.64 | 70.64 |
| PGSC0003DMT400057203 | Potato | cytosol | 61.81 | 64.27 |
| Solyc07g064510.2.1 | Tomato | plastid | 62.77 | 64.15 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 65.16 | 58.96 |
| CDY34835 | Canola | nucleus | 54.89 | 58.52 |
| CDY06734 | Canola | mitochondrion | 34.13 | 46.89 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 55.85 | 46.15 |
| CDY13992 | Canola | nucleus | 45.58 | 45.58 |
| CDY68866 | Canola | nucleus | 44.87 | 45.3 |
| CDY28101 | Canola | nucleus | 46.3 | 45.22 |
| CDY29341 | Canola | nucleus | 45.11 | 45.11 |
| CDY32840 | Canola | nucleus | 45.11 | 44.89 |
| CDY50959 | Canola | nucleus | 46.06 | 44.88 |
| CDX92537 | Canola | nucleus | 44.87 | 44.87 |
| CDY16528 | Canola | nucleus | 45.11 | 44.58 |
| CDY22988 | Canola | nucleus | 44.63 | 44.52 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 45.58 | 44.42 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 45.35 | 44.19 |
| CDX82310 | Canola | nucleus | 43.44 | 44.17 |
| CDX92304 | Canola | nucleus | 44.63 | 44.1 |
| CDX99265 | Canola | nucleus | 44.63 | 44.1 |
| Zm00001d021149_P001 | Maize | cytosol | 17.18 | 43.64 |
| CDY52067 | Canola | nucleus | 43.2 | 43.2 |
| CDX95462 | Canola | nucleus | 44.63 | 43.09 |
| CDY18570 | Canola | nucleus | 44.39 | 42.86 |
| CDX95176 | Canola | nucleus | 42.48 | 42.48 |
| CDY63384 | Canola | mitochondrion, nucleus | 26.25 | 26.32 |
| CDY02486 | Canola | nucleus | 26.01 | 25.95 |
| CDY61476 | Canola | nucleus | 25.78 | 25.78 |
| CDY51403 | Canola | nucleus | 25.78 | 25.71 |
| CDY33092 | Canola | nucleus | 26.01 | 25.65 |
| CDX81822 | Canola | mitochondrion, nucleus | 26.25 | 20.18 |
| CDY67365 | Canola | plastid | 13.6 | 19.52 |
| CDY59539 | Canola | nucleus | 14.8 | 16.94 |
| CDY43894 | Canola | nucleus | 14.32 | 16.48 |
| CDX69025 | Canola | nucleus, plastid | 23.87 | 16.37 |
| CDY67617 | Canola | nucleus | 14.8 | 16.27 |
| CDY66740 | Canola | nucleus | 14.8 | 16.27 |
| CDY72408 | Canola | plastid | 3.58 | 16.13 |
| CDX75397 | Canola | nucleus, plastid | 23.63 | 16.07 |
| CDY62723 | Canola | cytosol | 23.39 | 15.88 |
| CDY51957 | Canola | cytosol, plastid | 23.39 | 15.83 |
| CDY38939 | Canola | nucleus | 23.63 | 15.37 |
| CDY54068 | Canola | cytosol | 23.87 | 15.31 |
| CDX89664 | Canola | cytosol | 22.43 | 15.31 |
| CDX79296 | Canola | plastid | 6.68 | 15.3 |
| CDX89562 | Canola | nucleus | 23.39 | 15.19 |
| CDY51045 | Canola | cytosol | 23.63 | 15.16 |
| CDY56198 | Canola | cytosol | 17.66 | 15.13 |
| CDY46079 | Canola | nucleus | 22.43 | 14.94 |
| CDX71223 | Canola | cytosol | 22.2 | 14.58 |
| CDY67921 | Canola | nucleus | 22.43 | 14.57 |
| CDY57754 | Canola | nucleus | 7.4 | 14.55 |
| CDY30168 | Canola | cytosol | 18.38 | 14.31 |
| CDY41472 | Canola | cytosol, plastid | 21.72 | 14.2 |
| CDY03685 | Canola | nucleus | 21.24 | 13.84 |
| CDY37935 | Canola | nucleus | 21.48 | 13.82 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.0 | 13.58 |
| CDY36634 | Canola | nucleus | 21.0 | 13.56 |
| CDY36684 | Canola | plastid | 21.48 | 13.53 |
| CDX72826 | Canola | plastid | 21.96 | 13.45 |
| CDX96344 | Canola | plastid | 21.96 | 13.45 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.97 | 12.5 |
| CDY67364 | Canola | nucleus | 6.68 | 9.56 |
| CDY37229 | Canola | cytosol | 4.77 | 9.39 |
| CDX92325 | Canola | nucleus | 5.49 | 7.14 |
| CDX91689 | Canola | nucleus | 5.01 | 6.89 |
| CDY08990 | Canola | cytosol | 0.95 | 4.04 |
| CDX79295 | Canola | cytosol, plastid | 0.95 | 4.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078GXB3 | UniProt:A0A078GXB3 | EnsemblPlants:CDY29263 | ProteinID:CDY29263 |
| ProteinID:CDY29263.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00042199001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE170B |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g19150DBnaC01g19150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXB3]
Coordinates
chrLK032234:-:88229..91130
Molecular Weight (calculated)
45731.2 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.733
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQQPPPAAN GAAAAGSGRD QQAYHHQQWM MMMQQQQQQG QPPAGWNPQS SPSLGQQQQY GGGSQNPGSG GEIRSLWIGD LQPWMDESYL RNIFSTLTGE
101: VQQAKVIRNK QSGYSEGYGF IEFVSHAAAE RILQTYNGAQ MPGCEQTFRL NWAQLGAGER RQADGPEHTV FVGDLAPDVT DYMLTETFKA VYSSVKGAKV
201: VADRTTGRSK GYGFVKFGDE SEQIRAMTEM NGQYCSSRPM RTGPAANKKP LTMQQPGAYQ STQGNPGESD PTNTTIFVGA LDESVTEDGL KSVFGQFGEL
301: VHVKIPAGKR CGFVQYANRA CAEQALNQLN GTQLGGQSIR LSWGRSPNNK QTHVTQPDQG YYGYPPQGYE GYGYAPPPQD PSAHYGGYPG AGYGNYHQQP
401: GGYQQCLLIF PSVCYSEMQ
101: VQQAKVIRNK QSGYSEGYGF IEFVSHAAAE RILQTYNGAQ MPGCEQTFRL NWAQLGAGER RQADGPEHTV FVGDLAPDVT DYMLTETFKA VYSSVKGAKV
201: VADRTTGRSK GYGFVKFGDE SEQIRAMTEM NGQYCSSRPM RTGPAANKKP LTMQQPGAYQ STQGNPGESD PTNTTIFVGA LDESVTEDGL KSVFGQFGEL
301: VHVKIPAGKR CGFVQYANRA CAEQALNQLN GTQLGGQSIR LSWGRSPNNK QTHVTQPDQG YYGYPPQGYE GYGYAPPPQD PSAHYGGYPG AGYGNYHQQP
401: GGYQQCLLIF PSVCYSEMQ
001: MMQQPPPASN GAATGPGQIP SDQQAYLQQQ QSWMMQHQQQ QQGQPPAGWN QQSAPSSGQP QQQQYGGGGS QNPGSAGEIR SLWIGDLQPW MDENYLMNVF
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
101: GLTGEATAAK VIRNKQNGYS EGYGFIEFVN HATAERNLQT YNGAPMPSSE QAFRLNWAQL GAGERRQAEG PEHTVFVGDL APDVTDHMLT ETFKAVYSSV
201: KGAKVVNDRT TGRSKGYGFV RFADESEQIR AMTEMNGQYC SSRPMRTGPA ANKKPLTMQP ASYQNTQGNS GESDPTNTTI FVGAVDQSVT EDDLKSVFGQ
301: FGELVHVKIP AGKRCGFVQY ANRACAEQAL SVLNGTQLGG QSIRLSWGRS PSNKQTQPDQ AQYGGGGGYY GYPPQGYEAY GYAPPPQDPN AYYGGYAGGG
401: YGNYQQPGGY QQQQQ
Arabidopsis Description
RBP45CPolyadenylate-binding protein RBP45C [Source:UniProtKB/Swiss-Prot;Acc:Q93W34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.