CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96344	Canola	plastid	98.98	98.98
Bra016118.1-P	Field mustard	plastid	98.83	98.83
CDY36684	Canola	plastid	85.53	87.97
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	81.73	86.27
AT1G71770.1	Thale cress	cytosol, plastid	85.09	85.34
CDY37935	Canola	nucleus	80.56	84.64
CDY03685	Canola	nucleus	75.58	80.4
CDY41472	Canola	cytosol, plastid	68.13	72.7
CDX91689	Canola	nucleus	26.9	60.33
CDY67365	Canola	plastid	23.68	55.48
PGSC0003DMT400064531	Potato	cytosol	42.98	55.26
CDX79295	Canola	cytosol, plastid	7.89	54.0
CDY08990	Canola	cytosol	7.75	53.54
VIT_18s0001g02490.t01	Wine grape	plastid	51.32	53.26
KRG91724	Soybean	cytosol	50.0	52.45
CDX75397	Canola	nucleus, plastid	46.78	51.95
CDX69025	Canola	nucleus, plastid	46.34	51.88
CDY51957	Canola	cytosol, plastid	46.93	51.86
CDY62723	Canola	cytosol	46.64	51.7
CDX89664	Canola	cytosol	45.91	51.14
GSMUA_Achr5P24940_001	Banana	plastid	49.42	50.75
KRH08608	Soybean	endoplasmic reticulum	48.68	50.0
CDY54068	Canola	cytosol	47.51	49.77
CDY51045	Canola	cytosol	47.37	49.62
KRH70233	Soybean	cytosol	45.32	49.28
CDY46079	Canola	nucleus	45.32	49.28
CDX71223	Canola	cytosol	45.76	49.06
CDY38939	Canola	nucleus	45.47	48.29
CDX89562	Canola	nucleus	45.47	48.22
CDY36634	Canola	nucleus	45.47	47.92
CDY67921	Canola	nucleus	45.18	47.91
CDY72408	Canola	plastid	6.43	47.31
CDY67364	Canola	nucleus	19.3	45.05
CDX79296	Canola	plastid	10.82	40.44
CDY57754	Canola	nucleus	12.28	39.44
CDY33264	Canola	mitochondrion, nucleus	11.4	39.0
CDY37229	Canola	cytosol	11.26	36.15
CDX92325	Canola	nucleus	16.81	35.71
CDY30168	Canola	cytosol	27.19	34.57
CDY56198	Canola	cytosol	23.54	32.92
CDY43894	Canola	nucleus	13.45	25.27
CDY59539	Canola	nucleus	13.45	25.14
CDY67617	Canola	nucleus	13.89	24.93
CDY66740	Canola	nucleus	13.89	24.93
CDY06734	Canola	mitochondrion	11.11	24.92
CDY17286	Canola	nucleus	13.45	22.72
CDY13992	Canola	nucleus	13.74	22.43
CDX89287	Canola	nucleus	13.45	22.22
CDX92537	Canola	nucleus	13.6	22.2
CDY29263	Canola	nucleus	13.45	21.96
CDY19874	Canola	nucleus	13.45	21.96
CDY46671	Canola	nucleus	13.74	21.91
CDX92786	Canola	mitochondrion, nucleus, peroxisome	13.6	21.83
CDY34835	Canola	nucleus	12.43	21.63
CDX70874	Canola	cytosol, nucleus, peroxisome	13.6	21.63
CDY14290	Canola	nucleus	13.16	21.58
CDY16528	Canola	nucleus	13.3	21.46
CDX88893	Canola	cytosol, nucleus, peroxisome	13.45	21.4
CDY32840	Canola	nucleus	13.16	21.38
CDX99265	Canola	nucleus	13.16	21.23
CDY18570	Canola	nucleus	13.45	21.2
CDY22988	Canola	nucleus	13.01	21.19
CDY66423	Canola	nucleus	13.16	21.13
CDX82310	Canola	nucleus	12.72	21.12
CDY29341	Canola	nucleus	12.87	21.0
CDY52067	Canola	nucleus	12.72	20.76
CDX95176	Canola	nucleus	12.72	20.76
CDX92304	Canola	nucleus	12.87	20.75
CDX95462	Canola	nucleus	13.16	20.74
CDY50959	Canola	nucleus	13.01	20.7
CDY61476	Canola	nucleus	12.57	20.53
CDY28101	Canola	nucleus	12.87	20.51
CDY68866	Canola	nucleus	12.43	20.48
CDY02486	Canola	nucleus	12.57	20.48
CDY33092	Canola	nucleus	12.57	20.24
CDY63384	Canola	mitochondrion, nucleus	12.28	20.1
CDY51403	Canola	nucleus	12.28	20.0
CDY34639	Canola	nucleus, plastid, vacuole	12.57	16.96
CDX81822	Canola	mitochondrion, nucleus	12.72	15.96

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:A0A078C6U6	EnsemblPlants:CDX72826	ProteinID:CDX72826
ProteinID:CDX72826.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00103220001
InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0004EE20C7	SEG:seg

Description

BnaC06g32740D

Coordinates

chrLK031797:-:490915..493660

Molecular Weight (calculated)

75004.9 Da

IEP (calculated)

8.418

GRAVY (calculated)

-0.415

Length

684 amino acids

Sequence
(BLAST)

001: MAAAVASGIA PTTAMVDQVP NQPAVTVASP QSTTPFTQVA AVAAAAAAAE ALQAHPNSSL YVGDLDQSVN EAHLLDLFNQ VAPVQTVRVC RDLTRRSLGY
101: AYVNFANPDD AMRAMDSLNY TPIRDRPIRI MRSNRDPSTR LSGKGNVFIK NLDVSIDNKA LYDTFSIFGT ILSCKVAMDV TGRSKGYGFV QFEKEETAEA
201: AIDKLNGMLL NDKQVFVGHF VRRQDRARSE SGTVPRFTNV YVKNLPKEIG DDELKKTFGK YGDISSAVVM KDQSGSSRCF GFVNFESPEA AAVAVEKMNG
301: ISLGEDVLYV GRAQKKSERE EELRRKFELE RISRFEKLQG SNLYLKNLDE SVNDEKLKEM FSEYGNVTSC KVMMNSEGVS RGFGFVAYSC PEEALRAMNE
401: MNGKMIGRKP LYIALAQRKE ERRNHLQTLF SHMRPNGTMS PMASPMPGFH HHPPGGAMAG PHHPMYVGQN GQGLVPSQPM GYGYQLQFMP GVRPGSGPAN
501: FMMPYPLQRQ NQPGPRVGFR RGATNMQQHF QQQQMMQQNA SPGMRYMGGP GNRRNGMEGT APQGIIPLPL DASAISHNGS QNPQKPPLLP ISKLMSALAL
601: ANPASHPQML GEQLYPLVEK QEPVHTAKVT GMLLEMDQAE ILHLLESPEA LKAKVSEALD VLRLSANPPA VSSVDDQFAP SSTE

Best Arabidopsis Sequence Match ( AT1G71770.2 )
(BLAST)

001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE

Arabidopsis Description

PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.