Subcellular Localization
min:
: max
Winner_takes_all: vacuole, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34835 | Canola | nucleus | 75.35 | 97.2 |
| AT1G11650.2 | Thale cress | nucleus | 68.44 | 85.68 |
| KRH20867 | Soybean | nucleus | 51.48 | 63.81 |
| KRH51075 | Soybean | endoplasmic reticulum | 49.7 | 63.48 |
| KRH11417 | Soybean | nucleus | 51.28 | 63.26 |
| KRH02082 | Soybean | nucleus | 50.1 | 63.18 |
| Solyc10g005260.2.1 | Tomato | nucleus | 49.31 | 60.83 |
| PGSC0003DMT400029379 | Potato | nucleus | 47.53 | 60.25 |
| Solyc03g031720.2.1 | Tomato | nucleus | 47.73 | 59.75 |
| PGSC0003DMT400013036 | Potato | nucleus | 46.55 | 59.0 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 47.73 | 58.6 |
| PGSC0003DMT400042504 | Potato | nucleus | 47.34 | 58.11 |
| CDX89287 | Canola | nucleus | 47.34 | 57.97 |
| TraesCS7A01G295700.3 | Wheat | plastid | 35.11 | 57.23 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 47.14 | 56.1 |
| CDY29263 | Canola | nucleus | 46.15 | 55.85 |
| CDY46671 | Canola | nucleus | 46.94 | 55.48 |
| CDY14290 | Canola | nucleus | 45.56 | 55.4 |
| CDY66423 | Canola | nucleus | 45.36 | 53.99 |
| Os04t0625800-01 | Rice | nucleus | 44.97 | 53.65 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 43.2 | 53.41 |
| KXG27152 | Sorghum | nucleus | 45.36 | 53.0 |
| TraesCS6D01G081700.2 | Wheat | plastid | 42.8 | 52.93 |
| TraesCS6B01G128900.2 | Wheat | plastid | 43.39 | 52.76 |
| Zm00001d026346_P002 | Maize | extracellular | 44.38 | 52.57 |
| Os08t0190200-00 | Rice | nucleus | 45.76 | 52.49 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 43.39 | 52.26 |
| KXG24662 | Sorghum | nucleus | 46.94 | 52.19 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 46.94 | 52.19 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 44.58 | 51.83 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 44.58 | 51.83 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 44.58 | 51.83 |
| CDY17286 | Canola | nucleus | 41.22 | 51.6 |
| Zm00001d002244_P003 | Maize | nucleus | 44.97 | 50.89 |
| CDY19874 | Canola | nucleus | 40.83 | 49.4 |
| CDY06734 | Canola | mitochondrion | 28.01 | 46.56 |
| CDY13992 | Canola | nucleus | 38.26 | 46.3 |
| CDX92537 | Canola | nucleus | 37.87 | 45.82 |
| CDY16528 | Canola | nucleus | 38.07 | 45.52 |
| CDY32840 | Canola | nucleus | 37.67 | 45.37 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 38.26 | 45.12 |
| CDY29341 | Canola | nucleus | 37.28 | 45.11 |
| HORVU7Hr1G066510.3 | Barley | plastid | 38.86 | 45.08 |
| CDY68866 | Canola | nucleus | 36.88 | 45.06 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 41.03 | 45.02 |
| CDY28101 | Canola | nucleus | 38.07 | 44.99 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 37.87 | 44.65 |
| CDY50959 | Canola | nucleus | 37.87 | 44.65 |
| CDX82310 | Canola | nucleus | 35.7 | 43.93 |
| CDY22988 | Canola | nucleus | 36.09 | 43.57 |
| CDX99265 | Canola | nucleus | 36.29 | 43.4 |
| CDX92304 | Canola | nucleus | 36.09 | 43.16 |
| CDX95176 | Canola | nucleus | 35.11 | 42.48 |
| CDY52067 | Canola | nucleus | 35.11 | 42.48 |
| CDY18570 | Canola | nucleus | 35.9 | 41.94 |
| CDX95462 | Canola | nucleus | 35.9 | 41.94 |
| CDY63384 | Canola | mitochondrion, nucleus | 21.7 | 26.32 |
| CDY51403 | Canola | nucleus | 21.5 | 25.95 |
| CDY02486 | Canola | nucleus | 21.5 | 25.95 |
| CDY33092 | Canola | nucleus | 21.7 | 25.88 |
| CDY61476 | Canola | nucleus | 21.3 | 25.78 |
| CDY67365 | Canola | plastid | 11.64 | 20.21 |
| CDX81822 | Canola | mitochondrion, nucleus | 21.7 | 20.18 |
| CDY59539 | Canola | nucleus | 12.23 | 16.94 |
| CDY67617 | Canola | nucleus | 12.43 | 16.54 |
| CDY66740 | Canola | nucleus | 12.43 | 16.54 |
| CDX69025 | Canola | nucleus, plastid | 19.92 | 16.53 |
| CDY43894 | Canola | nucleus | 11.83 | 16.48 |
| CDX75397 | Canola | nucleus, plastid | 19.72 | 16.23 |
| CDY62723 | Canola | cytosol | 19.72 | 16.21 |
| CDY51957 | Canola | cytosol, plastid | 19.72 | 16.16 |
| CDX89562 | Canola | nucleus | 20.32 | 15.97 |
| CDY38939 | Canola | nucleus | 20.12 | 15.84 |
| CDX89664 | Canola | cytosol | 19.13 | 15.8 |
| CDX71223 | Canola | cytosol | 19.33 | 15.36 |
| CDY72408 | Canola | plastid | 2.76 | 15.05 |
| CDY67921 | Canola | nucleus | 18.54 | 14.57 |
| CDY57754 | Canola | nucleus | 6.11 | 14.55 |
| CDY51045 | Canola | cytosol | 18.74 | 14.55 |
| CDY46079 | Canola | nucleus | 17.95 | 14.47 |
| CDY54068 | Canola | cytosol | 18.54 | 14.4 |
| CDY56198 | Canola | cytosol | 13.81 | 14.31 |
| CDX79296 | Canola | plastid | 5.13 | 14.21 |
| CDY36634 | Canola | nucleus | 18.15 | 14.18 |
| CDY41472 | Canola | cytosol, plastid | 16.77 | 13.26 |
| CDY03685 | Canola | nucleus | 16.57 | 13.06 |
| CDY37935 | Canola | nucleus | 16.77 | 13.06 |
| CDX96344 | Canola | plastid | 17.16 | 12.72 |
| CDY30168 | Canola | cytosol | 13.41 | 12.64 |
| CDY36684 | Canola | plastid | 16.57 | 12.63 |
| CDX72826 | Canola | plastid | 16.96 | 12.57 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.98 | 12.5 |
| CDY33264 | Canola | mitochondrion, nucleus | 4.34 | 11.0 |
| CDY67364 | Canola | nucleus | 6.11 | 10.58 |
| CDX92325 | Canola | nucleus | 5.72 | 9.01 |
| CDY37229 | Canola | cytosol | 3.55 | 8.45 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.97 | 8.0 |
| CDY08990 | Canola | cytosol | 1.18 | 6.06 |
| CDX79295 | Canola | cytosol, plastid | 1.18 | 6.0 |
| CDX91689 | Canola | nucleus | 3.35 | 5.57 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078HAY9 | UniProt:A0A078HAY9 | EnsemblPlants:CDY34639 | ProteinID:CDY34639 |
| ProteinID:CDY34639.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00057096001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE934C |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g41980DBnaC08g41980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAY9]
Coordinates
chrLK032338:-:171958..176289
Molecular Weight (calculated)
56061.5 Da
IEP (calculated)
7.557
GRAVY (calculated)
-0.431
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKHWSKLMT VSIPQSLMFP KCSSYFVENN GKLVLSVCGI KYIKVYTAEK DDECQNVENL SMDPLISGSG FYYVLSLLPL VLMRAKRSQV LLKNRFMTVS
101: QSYLYSPPIV MQHPLPGGLL PHHVPPPSAQ QHYGYQQPPP YAMPGAAPPQ MWNPQAAPPS QPMTADEIRT LWIGDLQFWM DESFLYSCFA HTGEVLSVKV
201: IRNKQTSQVE GYGFIEFVSH AAAERALQTY NNTPIPGLPD HLFRLNWASL GSGDKRDDSP DYTIFVGDLA ADVTDYVLLE TFKAAYPSVK GAKVVIDRAT
301: GRTKGYGFVR FSDESEQIRA MSEMNGVPCS SRPMRIGPAA SKKGVSGQRD SYQSAALGVP TDNDPNNTTV FVGGLDPTIT DDHLKNVFSQ YGEIVHVKIP
401: AGKRCGFVQF SEKSCAEEAI RMLNGTQLGG TTVRLSWGRS PSSKQAADPS QYYYGGYGQG QEHYGYSMPQ DPNAYYGGYP GGYQQPPQVG QQPPQQPPQQ
501: QQVGFSY
101: QSYLYSPPIV MQHPLPGGLL PHHVPPPSAQ QHYGYQQPPP YAMPGAAPPQ MWNPQAAPPS QPMTADEIRT LWIGDLQFWM DESFLYSCFA HTGEVLSVKV
201: IRNKQTSQVE GYGFIEFVSH AAAERALQTY NNTPIPGLPD HLFRLNWASL GSGDKRDDSP DYTIFVGDLA ADVTDYVLLE TFKAAYPSVK GAKVVIDRAT
301: GRTKGYGFVR FSDESEQIRA MSEMNGVPCS SRPMRIGPAA SKKGVSGQRD SYQSAALGVP TDNDPNNTTV FVGGLDPTIT DDHLKNVFSQ YGEIVHVKIP
401: AGKRCGFVQF SEKSCAEEAI RMLNGTQLGG TTVRLSWGRS PSSKQAADPS QYYYGGYGQG QEHYGYSMPQ DPNAYYGGYP GGYQQPPQVG QQPPQQPPQQ
501: QQVGFSY
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.