Factsheet for Zm00001d002244_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27152	Sorghum	nucleus	92.41	95.39
Zm00001d026346_P002	Maize	extracellular	90.4	94.63
Os04t0625800-01	Rice	nucleus	82.81	87.29
TraesCS2D01G472700.1	Wheat	nucleus	80.58	82.8
TraesCS2B01G495700.1	Wheat	nucleus	80.36	82.57
TraesCS2A01G473000.1	Wheat	nucleus	80.36	82.57
Zm00001d049416_P001	Maize	extracellular, nucleus	75.67	74.34
KRH20867	Soybean	nucleus	60.04	65.77
KRH11417	Soybean	nucleus	58.93	64.23
KRH51075	Soybean	endoplasmic reticulum	56.7	63.98
Zm00001d013812_P001	Maize	nucleus	57.81	63.79
HORVU2Hr1G106810.1	Barley	nucleus	65.18	63.2
KRH02082	Soybean	nucleus	56.47	62.94
Solyc03g031720.2.1	Tomato	nucleus	54.46	60.25
Solyc10g005260.2.1	Tomato	nucleus	54.24	59.12
AT1G11650.2	Thale cress	nucleus	53.35	59.01
PGSC0003DMT400013036	Potato	nucleus	52.68	59.0
PGSC0003DMT400029379	Potato	nucleus	52.68	59.0
CDY34835	Canola	nucleus	51.34	58.52
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	53.57	58.11
Bra031774.1-P	Field mustard	nucleus	50.45	57.36
PGSC0003DMT400042504	Potato	nucleus	52.46	56.9
Zm00001d009512_P001	Maize	mitochondrion	15.18	51.52
Zm00001d021633_P006	Maize	nucleus	51.34	49.46
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	15.62	49.3
Zm00001d010739_P001	Maize	mitochondrion	13.39	48.39
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	44.64	47.17
Zm00001d020748_P002	Maize	plasma membrane	44.87	46.42
CDY34639	Canola	nucleus, plastid, vacuole	50.89	44.97
Zm00001d006496_P004	Maize	nucleus	52.9	43.65
Zm00001d050838_P001	Maize	plastid	41.07	42.79
Zm00001d021149_P001	Maize	cytosol	15.62	42.42
Zm00001d007929_P002	Maize	nucleus	33.93	42.34
Zm00001d025551_P002	Maize	plastid	41.07	40.71
Zm00001d016252_P001	Maize	nucleus	32.59	38.83
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	40.85	38.61
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	16.52	27.61
Zm00001d027869_P002	Maize	nucleus	39.73	23.33
Zm00001d031525_P004	Maize	nucleus	23.88	22.96
Zm00001d026528_P001	Maize	plastid	11.16	22.73
Zm00001d048824_P004	Maize	nucleus	21.43	21.48
Zm00001d049759_P003	Maize	nucleus	20.98	20.52
Zm00001d026522_P001	Maize	nucleus	10.71	19.67
Zm00001d014094_P002	Maize	extracellular, plasma membrane	13.39	16.81
Zm00001d032807_P001	Maize	nucleus	12.95	16.16
Zm00001d019824_P004	Maize	cytosol	22.32	15.24
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	22.1	15.18
Zm00001d005276_P007	Maize	cytosol	22.1	15.14
Zm00001d025801_P005	Maize	cytosol, plastid	21.88	15.03
Zm00001d046487_P001	Maize	cytosol	20.09	14.0
Zm00001d047790_P001	Maize	plastid	18.53	11.29
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.79	6.4

Protein Annotations

EntrezGene:100382170	MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A1D6DYK5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM13658.1
ProteinID:ONM13664.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF3	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008458DF6	EnsemblPlantsGene:Zm00001d002244	EnsemblPlants:Zm00001d002244_P003
EnsemblPlants:Zm00001d002244_T003	SEG:seg	:	:	:	:

Description

Polyadenylate-binding protein RBP45C

Coordinates

chr2:-:8756127..8760087

Molecular Weight (calculated)

48841.5 Da

IEP (calculated)

5.450

GRAVY (calculated)

-0.587

Length

448 amino acids

Sequence
(BLAST)

001: MMQQPPPQQP QPGMAPPPPP QAAGGQPPQW GGIPPPMAQQ YGAPPPQQPP AMWGQPPPQA HYGQAPTPQQ YYAAPPVPVQ APAAPAAADE VRTLWIGDLQ
101: YWMDENYVFG CFSNTGELWA IFLILEPVQN VKLIRDKNSG QLQGYGFVEF TSRAAAERVL QTYNGQMMPN VDLTFRLNWA SAGEKRDDTP EYTIFVGDLA
201: ADVTDYLLQE TFRVHYPSVK GAKVVTDKLT MRTKGYGFVK FGDPTEQARA MTEMNGMPCS SRPMRIGPAA SRKNTGGVVQ ERVPNSQGAQ SENDPNNTTI
301: FVGGLDPNVT EDTLKQVFSP YGEVVHVKIP VGKRCGFVQF VTRPSAEQAL LMLQGALIGA QNVRLSWGRS LSNKQAQPQQ ESNQWGAAAG AGGYYGGYGQ
401: GYEAYGSGYA QPQDPNMYGY GAYGGYPNYQ QQPAAQQQQQ QQVKLPAD

Best Arabidopsis Sequence Match ( AT1G11650.1 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.