Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d048824_P004 | Maize | nucleus | 93.64 | 46.09 |
EES08860 | Sorghum | nucleus | 88.64 | 44.22 |
Os11t0620100-01 | Rice | nucleus | 84.09 | 41.95 |
TraesCS4B01G148600.1 | Wheat | nucleus | 81.82 | 40.45 |
TraesCS4D01G150600.2 | Wheat | nucleus | 82.27 | 40.31 |
TraesCS4A01G150000.1 | Wheat | mitochondrion | 81.36 | 39.96 |
GSMUA_Achr6P11660_001 | Banana | mitochondrion | 73.18 | 38.06 |
GSMUA_Achr10P... | Banana | mitochondrion | 72.73 | 37.65 |
KRH06218 | Soybean | nucleus | 70.91 | 37.5 |
VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 70.91 | 37.14 |
PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 69.55 | 36.69 |
GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 71.82 | 36.41 |
KRH47641 | Soybean | nucleus | 69.55 | 36.26 |
Solyc06g063000.2.1 | Tomato | nucleus | 68.64 | 36.21 |
PGSC0003DMT400066072 | Potato | nucleus | 67.27 | 36.1 |
Solyc07g042180.2.1 | Tomato | nucleus | 65.0 | 35.93 |
VIT_11s0016g00700.t01 | Wine grape | mitochondrion, nucleus | 68.64 | 35.78 |
HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 71.36 | 35.76 |
AT1G17370.1 | Thale cress | mitochondrion, nucleus | 67.73 | 35.56 |
GSMUA_Achr11P... | Banana | nucleus | 71.36 | 35.36 |
PGSC0003DMT400007513 | Potato | mitochondrion, nucleus | 64.09 | 35.16 |
Solyc12g009230.1.1 | Tomato | mitochondrion, nucleus | 64.09 | 35.16 |
KRH19347 | Soybean | mitochondrion, nucleus | 65.0 | 34.88 |
CDY63384 | Canola | mitochondrion, nucleus | 65.91 | 34.69 |
Bra030985.1-P | Field mustard | mitochondrion, nucleus | 65.91 | 34.69 |
AT3G14100.1 | Thale cress | nucleus | 65.91 | 33.96 |
CDY61476 | Canola | nucleus | 64.55 | 33.89 |
Bra030908.1-P | Field mustard | nucleus | 64.55 | 33.89 |
CDY02486 | Canola | nucleus | 64.55 | 33.81 |
PGSC0003DMT400058919 | Potato | nucleus | 63.18 | 33.33 |
Solyc03g122180.2.1 | Tomato | nucleus | 63.18 | 33.33 |
CDY51403 | Canola | nucleus | 63.18 | 33.1 |
Bra037962.1-P | Field mustard | nucleus | 63.18 | 33.02 |
CDY33092 | Canola | nucleus | 63.64 | 32.94 |
KRH02581 | Soybean | mitochondrion | 61.82 | 32.93 |
GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 72.73 | 32.26 |
AT1G54080.2 | Thale cress | nucleus | 60.45 | 30.93 |
Zm00001d009512_P001 | Maize | mitochondrion | 18.18 | 30.3 |
Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 18.64 | 28.87 |
Zm00001d031525_P004 | Maize | nucleus | 60.45 | 28.54 |
Zm00001d010739_P001 | Maize | mitochondrion | 15.91 | 28.23 |
CDX81822 | Canola | mitochondrion, nucleus | 65.91 | 26.61 |
Zm00001d049759_P003 | Maize | nucleus | 53.18 | 25.55 |
Zm00001d021149_P001 | Maize | cytosol | 14.09 | 18.79 |
Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 23.64 | 14.57 |
Zm00001d032807_P001 | Maize | nucleus | 23.64 | 14.48 |
Zm00001d007929_P002 | Maize | nucleus | 22.73 | 13.93 |
Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 16.82 | 13.81 |
Zm00001d020748_P002 | Maize | plasma membrane | 26.82 | 13.63 |
Zm00001d016252_P001 | Maize | nucleus | 23.18 | 13.56 |
Zm00001d013812_P001 | Maize | nucleus | 25.0 | 13.55 |
Zm00001d050838_P001 | Maize | plastid | 26.36 | 13.49 |
Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 24.55 | 12.74 |
Zm00001d049416_P001 | Maize | extracellular, nucleus | 25.91 | 12.5 |
VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 8.18 | 12.33 |
Zm00001d026346_P002 | Maize | extracellular | 23.64 | 12.15 |
Zm00001d025551_P002 | Maize | plastid | 24.55 | 11.95 |
Zm00001d021633_P006 | Maize | nucleus | 24.09 | 11.4 |
Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 24.55 | 11.39 |
Zm00001d002244_P003 | Maize | nucleus | 22.73 | 11.16 |
Zm00001d006496_P004 | Maize | nucleus | 25.0 | 10.13 |
Zm00001d026522_P001 | Maize | nucleus | 9.55 | 8.61 |
Zm00001d025801_P005 | Maize | cytosol, plastid | 22.27 | 7.52 |
Zm00001d047790_P001 | Maize | plastid | 23.64 | 7.07 |
Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 20.91 | 7.06 |
Zm00001d005276_P007 | Maize | cytosol | 20.91 | 7.03 |
Zm00001d019824_P004 | Maize | cytosol | 20.91 | 7.01 |
Zm00001d046487_P001 | Maize | cytosol | 20.0 | 6.84 |
Zm00001d027869_P002 | Maize | nucleus | 23.64 | 6.82 |
Protein Annotations
MapMan:16.9.3 | Gene3D:3.30.70.330 | UniProt:A0A1D6JH19 | ProteinID:AQK46949.1 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
PFscan:PS50102 | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
SUPFAM:SSF54928 | UniParc:UPI0008423CC3 | EnsemblPlantsGene:Zm00001d026528 | EnsemblPlants:Zm00001d026528_P001 | EnsemblPlants:Zm00001d026528_T001 | SEG:seg |
Description
Oligouridylate-binding protein 1C
Coordinates
chr10:-:147615753..147620708
Molecular Weight (calculated)
24072.5 Da
IEP (calculated)
7.095
GRAVY (calculated)
-0.059
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQAAAAAAA AQQALLLQQQ SQPPLFPVHH PHPGLLAAPQ IEPIVSGNLP PGFDSSTCRS VYVCNIHLQV TDAVLQEVFQ SIGPVEGCKL IRKEKSSFGF
101: IDYHDRRYAA LAILSLNGRQ LYGQPIKVNW AYTSTPREGT SGHFNIFVGD LCPEVTDATL FAFFSGYSTC SDASVMWDQK TGRSRGFGFV SFRNQQDAQS
201: AINDLNGVFS SSMFLTYVPF
101: IDYHDRRYAA LAILSLNGRQ LYGQPIKVNW AYTSTPREGT SGHFNIFVGD LCPEVTDATL FAFFSGYSTC SDASVMWDQK TGRSRGFGFV SFRNQQDAQS
201: AINDLNGVFS SSMFLTYVPF
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.