Factsheet for GSMUA_Achr2P21780_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P25720_001
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P03500_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr9P30650_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	GSMUA_Achr11P...	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr1P25720_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr7P03500_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr9P30650_001	AT1G16500.1	21798944
AT3G14100.1	GSMUA_AchrUn_...	AT1G16500.1	21798944
AT3G14100.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT3G14100.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11660_001	Banana	mitochondrion	74.8	87.71
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	75.6	86.41
GSMUA_Achr10P...	Banana	mitochondrion	73.59	85.88
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	68.55	80.95
GSMUA_Achr11P...	Banana	nucleus	72.38	80.86
KRH47641	Soybean	nucleus	68.55	80.57
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	67.14	79.86
KRH06218	Soybean	nucleus	66.94	79.81
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	67.54	79.38
Solyc06g063000.2.1	Tomato	nucleus	66.73	79.38
Solyc03g122180.2.1	Tomato	nucleus	64.52	76.74
PGSC0003DMT400058919	Potato	nucleus	64.52	76.74
CDY63384	Canola	mitochondrion, nucleus	63.71	75.6
Bra030985.1-P	Field mustard	mitochondrion, nucleus	63.71	75.6
AT1G17370.1	Thale cress	mitochondrion, nucleus	63.71	75.42
KRH19347	Soybean	mitochondrion, nucleus	60.69	73.41
PGSC0003DMT400066072	Potato	nucleus	60.48	73.17
KRH02581	Soybean	mitochondrion	60.89	73.12
Os07t0615400-01	Rice	nucleus	62.9	73.07
AT3G14100.1	Thale cress	nucleus	62.7	72.83
Zm00001d026528_P001	Maize	plastid	32.26	72.73
Solyc07g042180.2.1	Tomato	nucleus	58.06	72.36
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	58.27	72.07
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	58.27	72.07
Os11t0620100-01	Rice	nucleus	63.71	71.66
Bra030908.1-P	Field mustard	nucleus	60.48	71.6
CDY02486	Canola	nucleus	60.48	71.43
TraesCS4B01G148600.1	Wheat	nucleus	63.91	71.24
CDY61476	Canola	nucleus	60.08	71.12
CDY51403	Canola	nucleus	59.68	70.48
Zm00001d048824_P004	Maize	nucleus	63.51	70.47
Bra037962.1-P	Field mustard	nucleus	59.68	70.31
TraesCS4D01G150600.2	Wheat	nucleus	63.1	69.71
CDY33092	Canola	nucleus	59.68	69.65
TraesCS4A01G150000.1	Wheat	mitochondrion	62.9	69.64
TraesCS2D01G176700.1	Wheat	nucleus	59.48	69.25
GSMUA_Achr9P14120_001	Banana	nucleus	56.45	68.97
EES08860	Sorghum	nucleus	61.29	68.93
TraesCS2A01G169100.1	Wheat	nucleus	59.27	68.69
TraesCS2B01G195400.1	Wheat	nucleus	59.27	68.53
AT1G54080.2	Thale cress	nucleus	58.87	67.91
HORVU4Hr1G033990.7	Barley	golgi, nucleus	59.68	67.43
HORVU2Hr1G031260.2	Barley	nucleus, plastid	62.1	61.97
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	17.94	60.96
CDX81822	Canola	mitochondrion, nucleus	63.71	57.98
Zm00001d026522_P001	Maize	nucleus	26.81	54.51
GSMUA_Achr9P15210_001	Banana	nucleus	18.75	29.81
GSMUA_Achr3P06840_001	Banana	nucleus	18.55	29.49
GSMUA_Achr6P10190_001	Banana	nucleus	18.15	28.75
GSMUA_Achr9P24980_001	Banana	cytosol	18.55	27.79
GSMUA_Achr6P29410_001	Banana	nucleus	18.35	27.74
GSMUA_Achr10P...	Banana	nucleus	17.54	27.71
GSMUA_Achr8P31320_001	Banana	nucleus	20.97	26.0
GSMUA_Achr3P01720_001	Banana	mitochondrion	19.96	24.57
GSMUA_Achr10P...	Banana	nucleus	21.17	24.19
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	18.55	22.6
GSMUA_Achr6P09470_001	Banana	nucleus	6.45	21.77
GSMUA_Achr5P20140_001	Banana	nucleus	14.52	19.67
GSMUA_Achr4P00840_001	Banana	cytosol	15.93	16.32
GSMUA_AchrUn_...	Banana	cytosol	19.56	14.88
GSMUA_Achr4P09890_001	Banana	cytosol	19.35	14.72
GSMUA_Achr4P20270_001	Banana	cytosol	18.95	14.62
GSMUA_Achr9P00990_001	Banana	cytosol	19.15	14.59
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	16.73	12.81
GSMUA_Achr5P24940_001	Banana	plastid	16.94	12.61
GSMUA_Achr9P10860_001	Banana	cytosol	17.74	12.31
GSMUA_Achr7P05430_001	Banana	nucleus	18.55	10.18

Protein Annotations

EnsemblPlants:GSMUA_Achr2P21780_001	EnsemblPlants:GSMUA_Achr2T21780_001	EnsemblPlantsGene:GSMUA_Achr2G21780_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002960C88	UniProt:M0SA19	MapMan:16.9.3	:

Description

Putative Nucleolysin TIAR [Source:GMGC_GENE;Acc:GSMUA_Achr2G21780_001]

Coordinates

chr2:+:21133734..21141182

Molecular Weight (calculated)

53999.5 Da

IEP (calculated)

7.743

GRAVY (calculated)

-0.391

Length

496 amino acids

Sequence
(BLAST)

001: MILVELTMYT CRQPRSQYRG HVTSWFTLSL SLSLSGSRGF ASSSSPFSFS VNPTATPHDT VELGSGWCRR TTLGRGTMQQ QRLKQQQQQA LMQQALLLQQ
101: QQQQQALYPH PGLLAAPQIE PILSGNLPPG FDPSTCRSVY VGNVHLQVTE ALLQEVFQST GLVEGCKLIR KEKSSFGFVD YYDRQSAALA IVTLNGRQLF
201: GQPLKVNWAY ASGQREDTSG HYNIFVGDLS PEITDATLFA CFSVYSSCSD ARVMWDQKTG RSRGFGFVSF RNQQDAQSAI NDLTGKWLGS RQIRCNWATK
301: GANANEDKQN SDSKSVMDLT NGSAEDGQEN TNDDGPENNP QYTTVYVTQL DLHRQFHGLG AGVIEEVRIQ REKGFGFVRY SNHSEAALAI QIGNGQILCG
401: KPIKCSWGSK PTPPGTSSAP LPPPAAAPFP GLSAADLFGY DPALALSKMS SSQSLMHAQG QHALKQAAMA MGAGGSQAIY DGGFQNASAA QQLMYY

Best Arabidopsis Sequence Match ( AT3G14100.1 )
(BLAST)

001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ

Arabidopsis Description

UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.