Factsheet for TraesCS4A01G150000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, peroxisome
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G459300.1
TraesCS2A01G459400.1
TraesCS2A01G459500.1
TraesCS2B01G480800.1
TraesCS2B01G480900.1
TraesCS2B01G481200.1
TraesCS2B01G481300.1
TraesCS2D01G459600.1
TraesCS2D01G459700.1
TraesCS2D01G459800.1
TraesCS4A01G296700.1
TraesCS4B01G017000.1
TraesCS4D01G015300.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	TraesCS2A01G459300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459400.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459500.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480900.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481200.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459600.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4A01G296700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4B01G017000.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4D01G015300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G148600.1	Wheat	nucleus	95.31	95.96
TraesCS4D01G150600.2	Wheat	nucleus	95.76	95.55
Os11t0620100-01	Rice	nucleus	84.6	85.94
HORVU4Hr1G033990.7	Barley	golgi, nucleus	83.93	85.65
Zm00001d026528_P001	Maize	plastid	39.96	81.36
Zm00001d048824_P004	Maize	nucleus	81.03	81.21
EES08860	Sorghum	nucleus	78.12	79.37
GSMUA_Achr6P11660_001	Banana	mitochondrion	68.97	73.05
GSMUA_Achr10P...	Banana	mitochondrion	68.97	72.71
AT1G17370.1	Thale cress	mitochondrion, nucleus	67.86	72.55
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	67.41	72.42
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	67.86	72.38
KRH06218	Soybean	nucleus	67.19	72.36
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	69.87	72.12
CDY63384	Canola	mitochondrion, nucleus	67.19	72.01
Bra030985.1-P	Field mustard	mitochondrion, nucleus	67.19	72.01
Solyc06g063000.2.1	Tomato	nucleus	66.74	71.7
KRH47641	Soybean	nucleus	67.41	71.56
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	66.07	70.14
PGSC0003DMT400058919	Potato	nucleus	65.18	70.02
Solyc03g122180.2.1	Tomato	nucleus	65.18	70.02
AT3G14100.1	Thale cress	nucleus	66.74	70.02
KRH19347	Soybean	mitochondrion, nucleus	63.17	69.02
CDY61476	Canola	nucleus	64.06	68.5
Bra030908.1-P	Field mustard	nucleus	63.84	68.26
CDY02486	Canola	nucleus	63.84	68.1
KRH02581	Soybean	mitochondrion	62.72	68.04
GSMUA_Achr11P...	Banana	nucleus	67.41	68.02
PGSC0003DMT400066072	Potato	nucleus	62.05	67.8
TraesCS2A01G169100.1	Wheat	nucleus	64.73	67.76
Bra037962.1-P	Field mustard	nucleus	63.62	67.7
CDY51403	Canola	nucleus	63.39	67.62
Solyc07g042180.2.1	Tomato	nucleus	60.04	67.59
CDY33092	Canola	nucleus	63.84	67.29
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	59.15	66.08
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	58.71	65.59
AT1G54080.2	Thale cress	nucleus	62.28	64.88
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	69.64	62.9
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	58.48	58.61
CDX81822	Canola	mitochondrion, nucleus	67.19	55.23
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	17.63	54.11
TraesCS5A01G243500.1	Wheat	nucleus	21.65	28.36
TraesCS6A01G204400.1	Wheat	mitochondrion	22.32	26.39
TraesCS2A01G317700.2	Wheat	plastid	22.54	23.82
TraesCS2A01G221900.2	Wheat	nucleus	24.55	23.71
TraesCS4A01G014200.1	Wheat	nucleus	21.43	23.08
TraesCS7A01G295700.3	Wheat	plastid	15.85	22.83
TraesCS2A01G473000.1	Wheat	nucleus	21.43	22.02
TraesCS6A01G100800.1	Wheat	nucleus	19.42	21.22
TraesCS2A01G256500.1	Wheat	nucleus	16.29	20.51
TraesCS1A01G143500.1	Wheat	nucleus	16.07	19.57
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	18.53	14.87
TraesCS2A01G359000.1	Wheat	cytosol	21.88	14.74
TraesCS7A01G288700.1	Wheat	nucleus	19.87	13.44
TraesCS5A01G161800.2	Wheat	nucleus	18.75	12.9
TraesCS4A01G099500.1	Wheat	cytosol	18.3	12.58

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS4A01G150000	EnsemblPlants:TraesCS4A01G150000.1	TIGR:cd12352	TIGR:cd12354	TIGR:cd12619	SEG:seg

Description

No Description!

Coordinates

chr4A:+:292924142..292929301

Molecular Weight (calculated)

48795.4 Da

IEP (calculated)

7.232

GRAVY (calculated)

-0.413

Length

448 amino acids

Sequence
(BLAST)

001: MQQRMKQAAA VAAQQQQQMM QQALLMHHHQ QQAAAAAAAV PPMFPPHHAH PGLLAAPHIE PIVSGNLPPG FDSSTCRSVY VGNIHLQVTD SLLHEVFQSI
101: GPVEGCKLIR KEKSSFGFVD YYDRRYAAIA IVSLNGRQLF GQPIKVNWAY ASTQREDTSG HFNIFVGDLC PEVTDAALFA FFSAYSTCSD ARVMWDQQTG
201: RSRGFGFVSF RNQQDAQTAM NELNGKWLGN RQIRCNWATK GANAGEEKQS TDSKGMVELI NGSSEAGKEN ANEDGPENNP QYTTVYVGNL PHDINSNDVH
301: RFFHLLGAGS IEEVRVTRDK GFGFVRYSTH EEAAQAIQTG NGQLIGGRQI KCSWGSKPTP PGTASAPLPP PALAPYTPGV SAADLISYDR SLALSKMAAD
401: PALVGQHAAL RQAAMDMGAG ARKAIFDGGF QSVNPQQQQQ QQQQLMYY

Best Arabidopsis Sequence Match ( AT3G14100.1 )
(BLAST)

001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ

Arabidopsis Description

UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.