Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G172000.1 | |
| TraesCS3B01G202800.2 | |
| TraesCS3D01G178500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | TraesCS3A01G172000.1 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | TraesCS3B01G202800.2 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | TraesCS3D01G178500.1 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G481200.1 | Wheat | cytosol | 88.31 | 92.31 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 87.88 | 91.86 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 87.45 | 91.4 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 67.53 | 88.14 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 79.65 | 82.51 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 74.89 | 81.6 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 17.32 | 65.57 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 61.04 | 65.28 |
| OQU82335 | Sorghum | plastid | 60.61 | 49.12 |
| Solyc07g066570.2.1 | Tomato | cytosol | 33.77 | 41.05 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 35.93 | 38.78 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 35.5 | 38.32 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 35.93 | 36.89 |
| PGSC0003DMT400056874 | Potato | cytosol | 35.06 | 36.82 |
| GSMUA_Achr11P... | Banana | cytosol | 37.66 | 36.1 |
| GSMUA_AchrUn_... | Banana | cytosol | 32.47 | 35.89 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 32.47 | 34.88 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 32.03 | 33.64 |
| Bra026718.1-P | Field mustard | nucleus | 33.77 | 32.23 |
| CDY51001 | Canola | nucleus | 33.77 | 31.97 |
| KRH13717 | Soybean | nucleus | 34.2 | 31.47 |
| CDY37016 | Canola | nucleus | 32.03 | 31.36 |
| CDX88511 | Canola | nucleus | 32.03 | 31.36 |
| CDX76373 | Canola | nucleus | 32.03 | 31.36 |
| Bra035096.1-P | Field mustard | nucleus | 31.6 | 31.33 |
| CDX81765 | Canola | cytosol | 32.47 | 31.12 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 32.9 | 31.02 |
| AT1G79160.1 | Thale cress | cytosol | 32.03 | 30.96 |
| AT1G16500.1 | Thale cress | cytosol | 34.63 | 30.89 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 31.6 | 29.8 |
| CDX79304 | Canola | cytosol | 29.0 | 29.65 |
| TraesCS4A01G296700.1 | Wheat | nucleus | 29.0 | 29.13 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 30.74 | 28.98 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G459500.1 | EnsemblPlantsGene:TraesCS2A01G459500 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF6 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2A:-:706529523..706530534
Molecular Weight (calculated)
23886.0 Da
IEP (calculated)
7.247
GRAVY (calculated)
-0.323
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAEKGKTRM AAEVSSIARM LRGEAGNGRG GAAKPSEMVT MDLLGGCGGD AGVEDDVVDL EVKVPAGWER RLDLLSGKTF LTPNRHQAIQ DGHQDLNLPP
101: TASTAAVAVT TNSSAFCTLD MVRCALERAA AARSATSPDT SSSSLASTSS SSSSLGKRSR SPPSSTASPA ANQAMRACAC PSCFTYVLIA EADPWCPRCA
201: SKVPPLPSKP AAHSSGKKPR FDLNADADET E
101: TASTAAVAVT TNSSAFCTLD MVRCALERAA AARSATSPDT SSSSLASTSS SSSSLGKRSR SPPSSTASPA ANQAMRACAC PSCFTYVLIA EADPWCPRCA
201: SKVPPLPSKP AAHSSGKKPR FDLNADADET E
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.