Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000891.1-P | |
| Bra008559.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | Bra000891.1-P | AT4G02150.1 | 21798944 |
| AT1G16500.1 | Bra008559.1-P | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51001 | Canola | nucleus | 94.21 | 93.44 |
| CDX81765 | Canola | cytosol | 87.19 | 87.55 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 68.59 | 67.76 |
| AT1G16500.1 | Thale cress | cytosol | 65.29 | 61.0 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 51.65 | 58.14 |
| Bra035096.1-P | Field mustard | nucleus | 54.96 | 57.08 |
| Solyc07g066570.2.1 | Tomato | cytosol | 41.32 | 52.63 |
| PGSC0003DMT400056874 | Potato | cytosol | 46.28 | 50.91 |
| KRH13717 | Soybean | nucleus | 49.17 | 47.41 |
| Os04t0617700-01 | Rice | cytosol, plasma membrane, plastid | 9.92 | 39.34 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 34.3 | 38.78 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 34.3 | 37.22 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 32.23 | 36.11 |
| TraesCS2B01G480800.1 | Wheat | cytosol | 33.06 | 36.04 |
| TraesCS2A01G459300.1 | Wheat | cytosol | 32.64 | 35.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.58 | 35.41 |
| TraesCS2B01G480900.1 | Wheat | cytosol | 30.17 | 35.27 |
| HORVU2Hr1G104270.1 | Barley | cytosol | 25.62 | 35.03 |
| TraesCS2B01G481300.1 | Wheat | cytosol | 31.82 | 34.84 |
| TraesCS2B01G481200.1 | Wheat | cytosol | 31.82 | 34.84 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 31.82 | 34.84 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 29.75 | 34.62 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 30.58 | 34.58 |
| TraesCS2A01G459400.1 | Wheat | cytosol | 29.75 | 33.96 |
| TraesCS2A01G459500.1 | Wheat | cytosol | 32.23 | 33.77 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 29.34 | 31.56 |
| HORVU2Hr1G104300.1 | Barley | cytosol, nucleus | 33.06 | 31.5 |
| GSMUA_Achr11P... | Banana | cytosol | 30.99 | 31.12 |
| Zm00001d013614_P001 | Maize | cytosol | 9.5 | 29.87 |
| HORVU0Hr1G005480.2 | Barley | cytosol | 25.21 | 28.91 |
| OQU82335 | Sorghum | plastid | 32.64 | 27.72 |
| EER91121 | Sorghum | cytosol | 26.86 | 26.97 |
| Zm00001d013615_P001 | Maize | cytosol | 25.21 | 26.64 |
| Zm00001d033459_P001 | Maize | cytosol | 24.79 | 26.43 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 23.97 | 26.01 |
| TraesCS4D01G015300.1 | Wheat | cytosol | 23.97 | 25.33 |
| TraesCS4A01G296700.1 | Wheat | nucleus | 23.55 | 24.78 |
| Os03t0660700-01 | Rice | nucleus | 19.42 | 24.48 |
| HORVU4Hr1G002540.1 | Barley | plastid | 21.9 | 15.82 |
Protein Annotations
Description
AT1G16500 (E=3e-071) | unknown protein
Coordinates
chrA09:-:33373071..33373954
Molecular Weight (calculated)
26181.2 Da
IEP (calculated)
7.968
GRAVY (calculated)
-0.377
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MTADVSYIVR ILGRYNDDRM TAKDSSGPGS SVALMTRDLL GSAGCGGDDH DLELDLDLKV PNGWEKRLDL KSGKVYLQQC NSTSSSTHLR RSDQFNQTVP
101: RFQDLNYPPV SSKPPERPLL SLFDDASLEL KLLPSSSPPS SSSSLSLPSS SSSFQSVCTL DKVKSALERV GKESSEMIKK RKSPEDGVCD LTAEASSPVA
201: VGCPGCLSYV LVMKNNPKCP RCNSFVPLAA MKKTKIDLNI SI
101: RFQDLNYPPV SSKPPERPLL SLFDDASLEL KLLPSSSPPS SSSSLSLPSS SSSFQSVCTL DKVKSALERV GKESSEMIKK RKSPEDGVCD LTAEASSPVA
201: VGCPGCLSYV LVMKNNPKCP RCNSFVPLAA MKKTKIDLNI SI
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
Arabidopsis Description
>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.