CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG32187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16500.1	KXG32187	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033459_P001	Maize	cytosol	69.29	73.57
Zm00001d013614_P001	Maize	cytosol	23.24	72.73
Zm00001d013615_P001	Maize	cytosol	63.07	66.38
TraesCS4A01G296700.1	Wheat	nucleus	53.94	56.52
TraesCS4B01G017000.1	Wheat	nucleus	52.28	56.5
TraesCS4D01G015300.1	Wheat	cytosol	53.53	56.33
Os03t0660700-01	Rice	nucleus	38.59	48.44
HORVU4Hr1G002540.1	Barley	plastid	50.62	36.42
GSMUA_Achr1P25720_001	Banana	cytosol	31.54	35.51
GSMUA_Achr7P03500_001	Banana	cytosol	31.54	35.51
Solyc07g066570.2.1	Tomato	cytosol	27.39	34.74
PGSC0003DMT400056874	Potato	cytosol	31.54	34.55
GSMUA_AchrUn_...	Banana	cytosol	29.05	33.49
VIT_19s0085g00030.t01	Wine grape	cytosol	28.63	32.09
VIT_10s0092g00640.t01	Wine grape	cytosol	29.05	31.82
KRH13717	Soybean	nucleus	31.95	30.68
GSMUA_Achr9P30650_001	Banana	cytosol	28.22	30.22
GSMUA_Achr11P...	Banana	cytosol	29.46	29.46
Bra035096.1-P	Field mustard	nucleus	26.56	27.47
AT1G79160.1	Thale cress	cytosol	26.97	27.2
Bra026718.1-P	Field mustard	nucleus	26.97	26.86
CDY37016	Canola	nucleus	26.14	26.69
CDX88511	Canola	nucleus	26.14	26.69
CDX76373	Canola	nucleus	26.14	26.69
CDY51001	Canola	nucleus	26.56	26.23
CDX81765	Canola	cytosol	25.73	25.73
CDY55881	Canola	cytosol, nucleus, plastid	25.73	25.31
OQU82335	Sorghum	plastid	29.88	25.26
AT1G16500.1	Thale cress	cytosol	26.97	25.1
Bra026046.1-P	Field mustard	cytosol, nucleus, plastid	25.31	24.9
CDY68470	Canola	cytosol, nucleus, plastid	24.9	24.49
CDX79304	Canola	cytosol	22.82	24.34

Protein Annotations

EnsemblPlants:EER91121	EnsemblPlantsGene:SORBI_3001G146100	EntrezGene:8056759	PANTHER:PTHR33177	PANTHER:PTHR33177:SF7	ProteinID:EER91121
ProteinID:EER91121.1	RefSeq:XP_002464123.1	SEG:seg	unigene:Sbi.15205	UniParc:UPI0001A81FCA	UniProt:C5WQE7
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:11752524..11754724

Molecular Weight (calculated)

24006.0 Da

IEP (calculated)

8.500

GRAVY (calculated)

-0.312

Length

241 amino acids

Sequence
(BLAST)

001: MAAEALGFMA RGANGGRAAE LVTRDFLGGC AGSDDARDAA SARNDAVPGW VSQQKHACPA TPRDLNLFPV AAAAASTKPC AVTTAPAPAP APSAAASASA
101: GGATTTYHSV CTIEKVKTAL ERFERGKQQQ SPHPHQQQHS GAGASPSSSS VTTSSVKRRG GGGDSSGGGV EQGDGCDSPS GGAGGGGMVA AACPRCFLYV
201: LISRSDPRCP RCESHVPAPP APAPAVSKKP RIDLNVGYLG T

Best Arabidopsis Sequence Match ( AT1G16500.1 )
(BLAST)

001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM

Arabidopsis Description

>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.