Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008345_P003 | |
| Zm00001d040274_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | Zm00001d008345_P003 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | Zm00001d040274_P001 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013614_P001 | Maize | cytosol | 28.38 | 84.42 |
| Zm00001d033459_P001 | Maize | cytosol | 75.55 | 76.21 |
| EER91121 | Sorghum | cytosol | 66.38 | 63.07 |
| TraesCS4D01G015300.1 | Wheat | cytosol | 59.83 | 59.83 |
| TraesCS4A01G296700.1 | Wheat | nucleus | 57.64 | 57.39 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 54.15 | 55.61 |
| Os03t0660700-01 | Rice | nucleus | 41.92 | 50.0 |
| HORVU4Hr1G002540.1 | Barley | plastid | 58.52 | 40.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.62 | 36.84 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 33.19 | 35.51 |
| Solyc07g066570.2.1 | Tomato | cytosol | 28.38 | 34.21 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 31.44 | 33.64 |
| PGSC0003DMT400056874 | Potato | cytosol | 30.57 | 31.82 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 29.69 | 31.63 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 31.0 | 31.56 |
| Zm00001d002301_P001 | Maize | cytosol, nucleus, plastid | 28.38 | 30.09 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 28.82 | 30.0 |
| GSMUA_Achr11P... | Banana | cytosol | 31.0 | 29.46 |
| KRH13717 | Soybean | nucleus | 31.0 | 28.29 |
| AT1G16500.1 | Thale cress | cytosol | 30.13 | 26.64 |
| AT1G79160.1 | Thale cress | cytosol | 27.07 | 25.94 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 27.51 | 25.71 |
| Bra035096.1-P | Field mustard | nucleus | 25.76 | 25.32 |
| Bra026718.1-P | Field mustard | nucleus | 26.64 | 25.21 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 26.64 | 24.9 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 26.64 | 24.9 |
| CDY51001 | Canola | nucleus | 26.2 | 24.59 |
| CDX88511 | Canola | nucleus | 25.33 | 24.58 |
| CDX76373 | Canola | nucleus | 25.33 | 24.58 |
| CDY37016 | Canola | nucleus | 25.33 | 24.58 |
| CDX81765 | Canola | cytosol | 25.33 | 24.07 |
| CDX79304 | Canola | cytosol | 22.71 | 23.01 |
Protein Annotations
| EnsemblPlants:Zm00001d013615_P001 | EnsemblPlants:Zm00001d013615_T001 | EnsemblPlantsGene:Zm00001d013615 | EntrezGene:107403239 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF7 |
| ProteinID:AQK64001.1 | SEG:seg | UniParc:UPI000221C0C6 | UniProt:A0A1D6GL02 | MapMan:35.2 | : |
Description
Expressed protein; protein
Coordinates
chr5:+:15493285..15495021
Molecular Weight (calculated)
23462.6 Da
IEP (calculated)
9.027
GRAVY (calculated)
-0.442
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEALGFMA RGANGGRAAE LVTRDFLGGC AATGDARDAS ARNGTVPGRV PQQKHACPPT PMDLNLFPIA AATKPCALTP SPSPSPAPAP ASAGGAGAGA
101: TTTYRSVCTI EKVKTALERF ERGRQQQPSH PHHNHPQQQQ QHSGAGASPS SSTVTTSSVK RRGGGVEQGD DCDSPSGGGG MVAAACPRCF LYVLISRSDP
201: RCPRCESHVP APAVSKKPRI DLNVGYLGT
101: TTTYRSVCTI EKVKTALERF ERGRQQQPSH PHHNHPQQQQ QHSGAGASPS SSTVTTSSVK RRGGGVEQGD DCDSPSGGGG MVAAACPRCF LYVLISRSDP
201: RCPRCESHVP APAVSKKPRI DLNVGYLGT
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
Arabidopsis Description
>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.