Factsheet for HORVU4Hr1G002540.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G034750.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16500.1	HORVU3Hr1G034750.5	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G015300.1	Wheat	cytosol	49.55	72.49
TraesCS4A01G296700.1	Wheat	nucleus	49.55	72.17
TraesCS4B01G017000.1	Wheat	nucleus	47.76	71.75
Zm00001d033459_P001	Maize	cytosol	42.09	62.11
Zm00001d013615_P001	Maize	cytosol	40.0	58.52
EER91121	Sorghum	cytosol	36.42	50.62
Os03t0660700-01	Rice	nucleus	24.78	43.23
Zm00001d013614_P001	Maize	cytosol	8.06	35.06
GSMUA_Achr7P03500_001	Banana	cytosol	22.39	35.05
GSMUA_Achr1P25720_001	Banana	cytosol	22.39	35.05
HORVU2Hr1G104270.1	Barley	cytosol	18.21	34.46
GSMUA_AchrUn_...	Banana	cytosol	21.19	33.97
Solyc07g066570.2.1	Tomato	cytosol	18.51	32.63
GSMUA_Achr11P...	Banana	cytosol	22.09	30.71
GSMUA_Achr9P30650_001	Banana	cytosol	20.3	30.22
PGSC0003DMT400056874	Potato	cytosol	19.1	29.09
HORVU0Hr1G005480.2	Barley	cytosol	18.21	28.91
HORVU2Hr1G104300.1	Barley	cytosol, nucleus	21.79	28.74
VIT_10s0092g00640.t01	Wine grape	cytosol	18.51	28.18
VIT_19s0085g00030.t01	Wine grape	cytosol	17.31	26.98
KRH13717	Soybean	nucleus	18.51	24.7
Bra035096.1-P	Field mustard	nucleus	16.72	24.03
AT1G79160.1	Thale cress	cytosol	17.01	23.85
AT1G16500.1	Thale cress	cytosol	18.21	23.55
CDX88511	Canola	nucleus	16.42	23.31
CDY37016	Canola	nucleus	16.42	23.31
CDX76373	Canola	nucleus	16.42	23.31
CDX79304	Canola	cytosol	15.52	23.01
CDY55881	Canola	cytosol, nucleus, plastid	16.42	22.45
Bra026718.1-P	Field mustard	nucleus	15.82	21.9
Bra026046.1-P	Field mustard	cytosol, nucleus, plastid	15.82	21.63
CDY68470	Canola	cytosol, nucleus, plastid	15.82	21.63
CDY51001	Canola	nucleus	15.52	21.31
CDX81765	Canola	cytosol	14.93	20.75

Protein Annotations

EnsemblPlants:HORVU4Hr1G002540.1	EnsemblPlantsGene:HORVU4Hr1G002540	PANTHER:PTHR33177	PANTHER:PTHR33177:SF7	SEG:seg	UniParc:UPI000B47FE17
UniProt:A0A287MXL1	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:4926302..4928273

Molecular Weight (calculated)

35027.9 Da

IEP (calculated)

10.104

GRAVY (calculated)

-0.307

Length

335 amino acids

Sequence
(BLAST)

001: LGWSIPIARP SPSPSRSLIS HHTRTGSGRP SSMPSAHSMH ILSSCLRFPT PQLMAPIRAS KPPPVSLPLS PPPIYPSPPP SQHPLLHFFL LSNQAPRSSR
101: RCLPSCAAVA RQMVAEAVGF MMSRAADGGA MAPELVTRDF LGGCQASAPA PADDPRHDAA AMPGKPPLQK HLSPPPSARG DLNLFPVSGA AIAPALAAES
201: AAAATTTTYH SVCTIEKVKT ALERFERGKQ GQQHHHHHHQ QHSGAGAGAS PSSSSVTTSS VKRRGDVEQG DGCDSPSASA TGGMVAAACP RCFLYVLIAR
301: SDPRCPRCES HVPPPPAPAP KKKPRIDLNV GFLGT

Best Arabidopsis Sequence Match ( AT1G79160.1 )
(BLAST)

001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI

Arabidopsis Description

Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.