Factsheet for TraesCS4A01G296700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G172000.1
TraesCS3B01G202800.2
TraesCS3D01G178500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16500.1	TraesCS3A01G172000.1	AT4G02150.1	21798944
AT1G16500.1	TraesCS3B01G202800.2	AT4G02150.1	21798944
AT1G16500.1	TraesCS3D01G178500.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G015300.1	Wheat	cytosol	85.22	85.59
TraesCS4B01G017000.1	Wheat	nucleus	82.61	85.2
Zm00001d033459_P001	Maize	cytosol	59.13	59.91
Zm00001d013615_P001	Maize	cytosol	57.39	57.64
EER91121	Sorghum	cytosol	56.52	53.94
HORVU4Hr1G002540.1	Barley	plastid	72.17	49.55
Os03t0660700-01	Rice	nucleus	38.26	45.83
Zm00001d013614_P001	Maize	cytosol	12.17	36.36
GSMUA_AchrUn_...	Banana	cytosol	31.74	34.93
GSMUA_Achr7P03500_001	Banana	cytosol	31.74	34.11
Solyc07g066570.2.1	Tomato	cytosol	27.39	33.16
GSMUA_Achr1P25720_001	Banana	cytosol	30.43	32.71
TraesCS2A01G459400.1	Wheat	cytosol	30.0	32.55
GSMUA_Achr11P...	Banana	cytosol	33.04	31.54
TraesCS2A01G459300.1	Wheat	cytosol	30.43	31.39
PGSC0003DMT400056874	Potato	cytosol	28.7	30.0
VIT_10s0092g00640.t01	Wine grape	cytosol	28.7	30.0
GSMUA_Achr9P30650_001	Banana	cytosol	29.13	29.78
TraesCS2A01G459500.1	Wheat	cytosol	29.13	29.0
VIT_19s0085g00030.t01	Wine grape	cytosol	26.52	28.37
KRH13717	Soybean	nucleus	29.13	26.69
Bra035096.1-P	Field mustard	nucleus	26.09	25.75
AT1G79160.1	Thale cress	cytosol	26.09	25.1
CDY37016	Canola	nucleus	25.65	25.0
CDX88511	Canola	nucleus	25.65	25.0
CDX76373	Canola	nucleus	25.65	25.0
AT1G16500.1	Thale cress	cytosol	26.96	23.94
CDX79304	Canola	cytosol	23.48	23.89
Bra026718.1-P	Field mustard	nucleus	24.78	23.55
CDY55881	Canola	cytosol, nucleus, plastid	24.78	23.27
CDY51001	Canola	nucleus	24.35	22.95
CDY68470	Canola	cytosol, nucleus, plastid	23.91	22.45
Bra026046.1-P	Field mustard	cytosol, nucleus, plastid	23.91	22.45
CDX81765	Canola	cytosol	23.04	21.99

Protein Annotations

EnsemblPlants:TraesCS4A01G296700.1

EnsemblPlantsGene:TraesCS4A01G296700

PANTHER:PTHR33177

PANTHER:PTHR33177:SF7

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr4A:+:596672137..596673917

Molecular Weight (calculated)

23645.1 Da

IEP (calculated)

8.230

GRAVY (calculated)

-0.347

Length

230 amino acids

Sequence
(BLAST)

001: MVAEAVGFMM PRAADGGTMA PELVTRDFLG GCQAPAPAAD DPRHDAAALQ PGKPPLQKHL SPPPSARGDL NLFPAAGAAM APLPTMAPAA DCAATTTYHS
101: VCTIEKVKTA LERFERGKQG HHHQQQQQQQ QHSGAGATAG ASPSSSSVTT SSVKRRGDVA VEQGDGCDSP SASAGGGGMV AAACPRCFLY VLIARSDPRC
201: PRCESHVPPP PAPAPKKKPR IDLNVGFLGT

Best Arabidopsis Sequence Match ( AT1G79160.1 )
(BLAST)

001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI

Arabidopsis Description

Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.