Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G178500.1 | Wheat | cytosol | 90.88 | 93.13 |
| TraesCS3A01G172000.1 | Wheat | golgi, nucleus | 90.88 | 93.13 |
| HORVU3Hr1G034750.5 | Barley | cytosol | 90.5 | 91.18 |
| Os01t0253300-01 | Rice | cytosol | 84.17 | 85.93 |
| KXG32187 | Sorghum | cytosol | 83.05 | 84.47 |
| Zm00001d040274_P001 | Maize | cytosol | 82.87 | 84.12 |
| Zm00001d008345_P003 | Maize | cytosol | 82.87 | 83.96 |
| PGSC0003DMT400076860 | Potato | cytosol | 77.65 | 78.83 |
| VIT_07s0005g01100.t01 | Wine grape | cytosol | 77.47 | 78.64 |
| PGSC0003DMT400018802 | Potato | cytosol | 74.49 | 75.9 |
| Solyc06g009750.2.1 | Tomato | nucleus | 74.3 | 75.71 |
| TraesCS1B01G126500.1 | Wheat | cytosol | 74.86 | 75.28 |
| Solyc08g041890.2.1 | Tomato | nucleus | 77.84 | 72.44 |
| AT1G02690.2 | Thale cress | cytosol | 69.27 | 69.02 |
| AT4G02150.1 | Thale cress | cytosol | 68.16 | 68.93 |
| CDY01921 | Canola | cytosol | 66.85 | 67.61 |
| Bra008559.1-P | Field mustard | cytosol | 66.67 | 67.42 |
| CDX97257 | Canola | cytosol | 66.67 | 67.42 |
| Bra033342.1-P | Field mustard | cytosol | 64.8 | 66.79 |
| CDX89948 | Canola | cytosol | 64.62 | 66.6 |
| CDY64806 | Canola | cytosol | 63.13 | 65.44 |
| CDX90948 | Canola | cytosol | 62.01 | 64.29 |
| Bra000891.1-P | Field mustard | cytosol | 61.83 | 64.09 |
| CDY15260 | Canola | cytosol | 63.69 | 44.13 |
| TraesCS2B01G112400.2 | Wheat | cytosol | 45.81 | 43.62 |
| PGSC0003DMT400076768 | Potato | cytosol, extracellular, mitochondrion, plastid | 6.33 | 38.2 |
| TraesCS3B01G152900.1 | Wheat | plastid | 28.86 | 29.58 |
Protein Annotations
| Gene3D:1.20.5.690 | Gene3D:1.25.10.10 | MapMan:23.5.1.3 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:Arm_3 |
| InterPro:Armadillo | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006606 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008565 | GO:GO:0061608 | InterPro:IPR000225 | InterPro:IPR002652 | InterPro:IPR011989 |
| InterPro:IPR036975 | InterPro:Importin-a_IBB | InterPro:Importin-a_IBB_sf | InterPro:Importing_su_alpha | PFAM:PF00514 | PFAM:PF01749 |
| PFAM:PF16186 | PIRSF:PIRSF005673 | PFscan:PS50176 | PFscan:PS51214 | PANTHER:PTHR23316 | PANTHER:PTHR23316:SF22 |
| SMART:SM00185 | SUPFAM:SSF48371 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3B01G202800 | EnsemblPlants:TraesCS3B01G202800.2 | SEG:seg |
Description
No Description!
Coordinates
chr3B:+:237106299..237110476
Molecular Weight (calculated)
58948.8 Da
IEP (calculated)
5.908
GRAVY (calculated)
-0.159
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVRPSERAD ARRNRYKVTV DADEGRRRRE DNMVEIRKNR REESLLKKRR EGLQAQAPIP AAGVEKKLES LPAMVGGVYS EDNNLQLEAT TQFRKLLSIE
101: RSPPIEEVIQ SGVVPRFVQF LTREDFPQLQ FEAAWALTNI ASGTSENTKV VIDHGAVPIF VKLLASGSDD VREQAVWALG NVAGDSPKCR DLVLANGALM
201: PLLAQLNEHA KLSMLRNATW TLSNFCRGKP QPAFDQTKPA LPALARLIHS NDEEVLTDAC WALSYLSDGT NDKIQSVIDA GVCPRLVELL LHPSPSVLIP
301: ALRTVGNIVT GDDSQTQCII DHQALGCLLS LLTQNHKKSI KKEACWTVSN ITAGNKDQIQ AVITAGIIGP LVHLLQTAEF DIKKEAAWAI SNATSGGSHD
401: QIKYLVSEGC IKPLCDLLLC PDPRIVTVCL EGLENILKVG ETDKNLGASG EGNVYAQMID EAEGLEKIEN LQSHDNNEIY EKALKIFKEA TGPGYQYRSV
501: CKRSIIVKLE ESGSFLSGYY VGVASLVWCA LFCYCIA
101: RSPPIEEVIQ SGVVPRFVQF LTREDFPQLQ FEAAWALTNI ASGTSENTKV VIDHGAVPIF VKLLASGSDD VREQAVWALG NVAGDSPKCR DLVLANGALM
201: PLLAQLNEHA KLSMLRNATW TLSNFCRGKP QPAFDQTKPA LPALARLIHS NDEEVLTDAC WALSYLSDGT NDKIQSVIDA GVCPRLVELL LHPSPSVLIP
301: ALRTVGNIVT GDDSQTQCII DHQALGCLLS LLTQNHKKSI KKEACWTVSN ITAGNKDQIQ AVITAGIIGP LVHLLQTAEF DIKKEAAWAI SNATSGGSHD
401: QIKYLVSEGC IKPLCDLLLC PDPRIVTVCL EGLENILKVG ETDKNLGASG EGNVYAQMID EAEGLEKIEN LQSHDNNEIY EKALKIFKEA TGPGYQYRSV
501: CKRSIIVKLE ESGSFLSGYY VGVASLVWCA LFCYCIA
001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA
Arabidopsis Description
IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.