Factsheet for TraesCS5A01G040600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G172000.1
TraesCS3B01G202800.2
TraesCS3D01G178500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	TraesCS3A01G172000.1	AT4G02150.1	21798944
AT5G57120.1	TraesCS3B01G202800.2	AT4G02150.1	21798944
AT5G57120.1	TraesCS3D01G178500.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G047700.1	Wheat	nucleus	94.14	93.95
TraesCS5B01G041800.1	Wheat	nucleus	93.74	93.93
HORVU5Hr1G009830.3	Barley	nucleus	87.07	81.94
Os12t0613500-01	Rice	nucleus	57.98	64.06
KXG23990	Sorghum	plastid	59.19	53.37
Zm00001d041495_P005	Maize	plastid	51.72	45.23
KRH02764	Soybean	nucleus	26.06	37.18
KRH19114	Soybean	nucleus	26.87	35.56
CDY52493	Canola	plastid	26.26	35.14
CDY53983	Canola	nucleus	22.83	34.45
Bra035650.1-P	Field mustard	nucleus, plastid	25.86	33.95
CDY32901	Canola	plastid	25.45	33.69
AT5G57120.1	Thale cress	nucleus	21.82	32.73
PGSC0003DMT400051236	Potato	nucleus	26.46	32.11
Solyc07g008330.2.1	Tomato	nucleus	26.46	31.87
GSMUA_Achr7P07940_001	Banana	nucleus	34.14	30.4
VIT_11s0052g00300.t01	Wine grape	nucleus	20.81	22.74

Protein Annotations

EnsemblPlants:TraesCS5A01G040600.1	EnsemblPlantsGene:TraesCS5A01G040600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR006594
InterPro:LisH	InterPro:SRP40_C	PANTHER:PTHR23216	PFAM:PF05022	PFscan:PS50896	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:36493565..36496338

Molecular Weight (calculated)

53093.2 Da

IEP (calculated)

9.157

GRAVY (calculated)

-1.214

Length

495 amino acids

Sequence
(BLAST)

001: MLFVPRQVAL ASLPSAPAAA AMAKEEAKKE KKSKSKGAAT KASPGPDPRV LAAVAAFLES SGLPRTLAAL LSEANLEGDA WRSSPVNLED VVSKLLESST
101: SAPGADITAS NEQEKTDDAV AEEKGVGKKK KNKKGGAEAH ESESKASEPS APEKPSEKAD DETKEKKRKK KKDSSSVGGD GEANAVVKTD DQKTDGKKKK
201: SKKQENDEDV EARLEKVELA VKAKFEAAGK LKDHDKKSGE DEPKTQNDEA NENGLSDGAP LDKGKKKKKS KSTSETSDKI DAGTAPAEAE VKSNGASENN
301: NAVGEGKDVN EKKSKKKKKK SGSEENVQVE DKQVAGKDSA PKPDDENKTA MDIENGQDGK ASADDAVVSK KRKLEEVEGS KPPAKEDITA TEDDVKEPST
401: ASKSNKRQKL SEPKIAFQRV KTEDIKFADE RLQDNSYWAK GGADSGYGAK AQEILGQVRG RDFRHEKTKK KRGTYKGGFI DLQTHSIKFN NSDDE

Best Arabidopsis Sequence Match ( AT5G57120.1 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKET KVKVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK
201: KEENVVENDE GVQETPVKET ETKENGNAEK SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE
301: KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.