Factsheet for Zm00001d041495_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008345_P003
Zm00001d040274_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	Zm00001d008345_P003	AT4G02150.1	21798944
AT5G57120.1	Zm00001d040274_P001	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23990	Sorghum	plastid	72.61	74.86
Os12t0613500-01	Rice	nucleus	45.05	56.92
TraesCS5A01G040600.1	Wheat	nucleus, plastid	45.23	51.72
TraesCS5D01G047700.1	Wheat	nucleus	45.23	51.61
TraesCS5B01G041800.1	Wheat	nucleus	44.52	51.01
HORVU5Hr1G009830.3	Barley	nucleus	43.29	46.58
CDY52493	Canola	plastid	21.02	32.16
Bra035650.1-P	Field mustard	nucleus, plastid	21.2	31.83
CDY32901	Canola	plastid	21.02	31.82
AT5G57120.1	Thale cress	nucleus	18.2	31.21
CDY53983	Canola	nucleus	16.96	29.27
Solyc07g008330.2.1	Tomato	nucleus	20.67	28.47
PGSC0003DMT400051236	Potato	nucleus	20.14	27.94
KRH02764	Soybean	nucleus	16.96	27.67
KRH19114	Soybean	nucleus	18.02	27.27
VIT_11s0052g00300.t01	Wine grape	nucleus	19.08	23.84
GSMUA_Achr7P07940_001	Banana	nucleus	22.97	23.38

Protein Annotations

EntrezGene:100382414	MapMan:35.2	UniProt:A0A1D6MWH2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
InterPro:IPR006594	InterPro:LisH	ProteinID:ONM33127.1	PFAM:PF05022	PFscan:PS50896	PANTHER:PTHR23216
InterPro:SRP40_C	UniParc:UPI00084338D6	EnsemblPlantsGene:Zm00001d041495	EnsemblPlants:Zm00001d041495_P005	EnsemblPlants:Zm00001d041495_T005	SEG:seg

Description

SRP40 carboxy-terminal domain protein

Coordinates

chr3:+:124129914..124133015

Molecular Weight (calculated)

60335.4 Da

IEP (calculated)

8.408

GRAVY (calculated)

-0.976

Length

566 amino acids

Sequence
(BLAST)

001: MLFVPRQVVL AASSQPRAAA SSAMAKEESK KEKKKAKAKV ANGAAAAAAA PVPGARAAVV ASVAAFLESA GLSRTLVALQ SEAGLEAGAW GSSQVNLEEL
101: VARFLESSNS TRAAAILGSD EQDKENDDIA GEVGKEKKRS GTEAGEPESK AIEPLAEEKP TENMDGEAKE KKQKKKKDKG DPSAANAASE GTTEIVKNAD
201: QKDDEAKEKK QKKKKDKGDP SAAGAGSGET TETVKEDDHK LDGKKKKKNK KQGKDDDVEA RLEKAELAIL NKFEAAEKLN GREVEPKGQN DSADDCSGAV
301: ERKKKKKEKS SAGTSEKTDA GSAPAEADGA KGKNGAVETV KDDNEKKAKK KRKKSNPEET VQVEGKEAAG KDSVPKQDDA NKSVMEIEEG NQGKSSNENA
401: VAGKKRKLEE VEGSIPPVTG KEDCTANESL SNGFAEDKKE ESNTKPSKRQ KHSSEPKTVT PFQRIKVDDV RFADDRLQDN SYWAKGGADT GYGAKAQEIL
501: GQVKGRPGAG GKKRCDGWCM QYNTVPAGLN QLRLCDVNVA TLRVMSLPVL LIPFEMTTLE PLMEVQ

Best Arabidopsis Sequence Match ( AT5G57120.2 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK KEENVVENDE GVQETPVKET ETKENGNAEK
201: SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.