CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90948
CDX97257
CDY01921
CDY64806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	CDX90948	AT4G02150.1	21798944
AT5G57120.1	CDX97257	AT4G02150.1	21798944
AT5G57120.1	CDY01921	AT4G02150.1	21798944
AT5G57120.1	CDY64806	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52493	Canola	plastid	54.27	48.11
AT5G57120.1	Thale cress	nucleus	47.26	46.97
CDY32901	Canola	plastid	53.05	46.52
KRH02764	Soybean	nucleus	35.06	33.14
KRH19114	Soybean	nucleus	36.89	32.35
PGSC0003DMT400051236	Potato	nucleus	34.45	27.7
Os12t0613500-01	Rice	nucleus	37.2	27.23
Solyc07g008330.2.1	Tomato	nucleus	33.54	26.76
TraesCS5A01G040600.1	Wheat	nucleus, plastid	34.45	22.83
TraesCS5D01G047700.1	Wheat	nucleus	34.15	22.58
TraesCS5B01G041800.1	Wheat	nucleus	33.84	22.47
HORVU5Hr1G009830.3	Barley	nucleus	34.15	21.29
KXG23990	Sorghum	plastid	34.76	20.77
GSMUA_Achr7P07940_001	Banana	nucleus	32.93	19.42
VIT_11s0052g00300.t01	Wine grape	nucleus	24.39	17.66
Zm00001d041495_P005	Maize	plastid	29.27	16.96

Protein Annotations

EnsemblPlants:CDY53983	EnsemblPlantsGene:GSBRNA2T00011851001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:IPR006594	InterPro:LisH
InterPro:SRP40_C	PANTHER:PTHR23216	PFAM:PF05022	PFscan:PS50896	ProteinID:CDY53983	ProteinID:CDY53983.1
SEG:seg	SMART:SM00667	UniParc:UPI0004EB5001	UniProt:A0A078IYA1	MapMan:35.2	:

Description

BnaC09g53500DBnaC09g53500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYA1]

Coordinates

chrLK033259:-:66966..68673

Molecular Weight (calculated)

37323.6 Da

IEP (calculated)

8.395

GRAVY (calculated)

-1.281

Length

328 amino acids

Sequence
(BLAST)

001: MSEPNRGKTQ ISPKTSSSSG IIRLLGSKEF SQIELIFRPV LMEKESKAST LKSDQKVIVL RSVAQYLERC GFSKCFKKLL SEAEIEKKEL DSSLPDLDEV
101: FCQFFHKSYV EAVEVKESGD DNEDGKKKAA SVDENGSDDH EKDEKAKKEK KKKKKKEPEV EVKETDAEIE DGLKEKKKKK KTKPKPEETK EQTEEEDDEE
201: SKRRKKDESV VDETPVKKQA ADVQENGNVE KSEKKSGKGL SNSKVPKKPF QRVNVEEIVF TDERLKDNSY WAKDGADSGY GAKAQEVLGQ VRGRGFRHEK
301: TKKKRGSYRG GEIDVRSHSV KFEYSDDE

Best Arabidopsis Sequence Match ( AT5G57120.2 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK KEENVVENDE GVQETPVKET ETKENGNAEK
201: SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.