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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • mitochondrion 3
  • cytosol 1
  • plastid 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G172000.1
TraesCS3B01G202800.2
TraesCS3D01G178500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G57120.1 TraesCS3A01G172000.1 AT4G02150.1 21798944
AT5G57120.1 TraesCS3B01G202800.2 AT4G02150.1 21798944
AT5G57120.1 TraesCS3D01G178500.1 AT4G02150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G040600.1 Wheat nucleus, plastid 93.95 94.14
TraesCS5B01G041800.1 Wheat nucleus 93.75 94.13
HORVU5Hr1G009830.3 Barley nucleus 86.49 81.56
Os12t0613500-01 Rice nucleus 57.66 63.84
KXG23990 Sorghum plastid 59.27 53.55
Zm00001d041495_P005 Maize plastid 51.61 45.23
KRH02764 Soybean nucleus 26.01 37.18
KRH19114 Soybean nucleus 26.81 35.56
CDY52493 Canola plastid 26.41 35.41
Bra035650.1-P Field mustard nucleus, plastid 26.01 34.22
CDY53983 Canola nucleus 22.58 34.15
CDY32901 Canola plastid 25.4 33.69
AT5G57120.1 Thale cress nucleus 21.98 33.03
PGSC0003DMT400051236 Potato nucleus 26.01 31.62
Solyc07g008330.2.1 Tomato nucleus 26.01 31.39
GSMUA_Achr7P07940_001 Banana nucleus 33.27 29.68
VIT_11s0052g00300.t01 Wine grape nucleus 20.36 22.3
Protein Annotations
EnsemblPlants:TraesCS5D01G047700.1EnsemblPlantsGene:TraesCS5D01G047700GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR006594
InterPro:LisHInterPro:SRP40_CPANTHER:PTHR23216PFAM:PF05022PFscan:PS50896SEG:seg
MapMan:35.2:::::
Description
No Description!
Coordinates
chr5D:-:45685171..45688001
Molecular Weight (calculated)
52883.0 Da
IEP (calculated)
9.620
GRAVY (calculated)
-1.180
Length
496 amino acids
Sequence
(BLAST)
001: MLFVPRQVAL ASLPSIPAAA AAMAKEEAKK EKKSKSKGAA AKASPAPDAR VLAAVAAFLE SSGLPRTLAA LQSEANIEGD AWRSSPVNLE DAVSKLLESS
101: TSAPGADLAA SNEQEKTDAA AAEEKGAGKK KKSKKGGAEA HESESKASEP SAPEKPSEKA DDETKEKKQK KKKGSSSAGD DGEANAVVKT DHQKTDGKKK
201: KSKKQENDED VEARLEKVEL AVKAKFEAAG KLKVDNKKSG ADEPKTQNDE ANENGLSDGA PLDKGKKKKK SKSTSETSDK TDAGTVPTEA EVKSNGASEN
301: NNAVGEGKDV NEKKSKKKKK KSGSEENVQV EDKQVAGKDS APKPDDQNKT AMDIENGEDG KASADDAVVS KKRKLEEVEG SKPPAKEDIT ATEDDMKEPS
401: TASKSNKRQK LSEPKIAFQR VKTEGIKFAD ERLQDNSYWA KGGADSGYGA KAQEILGQVR GRDFRHEKTK KKRGTYKGGF IDLQTHSIKF NNSDDE
Best Arabidopsis Sequence Match ( AT5G57120.2 )
(BLAST)
001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK KEENVVENDE GVQETPVKET ETKENGNAEK
201: SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE KTKKKRGSYR GGLIDQESHS TKFNNSDDEE
Arabidopsis Description
AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.